Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002124`

染色体: Chr07 坐标: 19372803-19386269 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002124`
名称	SmilChr07G002124
描述	ENHANCER OF AG-4 protein 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19372803 - 19386269 / `-`

ID 对照

NCBI Gene ID	`LOC130993207`
GeneID	`130993207`
locus_tag	`-`
NCBI Name	`LOC130993207`
原始查询	`SmilChr07G002124`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ENHANCER OF AG-4 protein 2-like
产物	ENHANCER OF AG-4 protein 2-like
Arabidopsis	`AT5G23150` (HUA2) Tudor/PWWP/MBT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832379] identity=40.4; qcov=0.774; evalue=0; confidence=medium
Rice	`Os08g0100500` (B1147B12.7-2) - identity=56.8; qcov=0.217; evalue=1.81e-88; confidence=weak
GO	GO:0003690 (double-stranded DNA binding); GO:0003712 (transcription coregulator activity); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00855 (PWWP); PF04818 (CID); PF12243 (CTK3)
InterPro	-
eggNOG	-
NR	GeneID:130993207

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773998.1`
2	Nuclear speckle	核斑点	0.20000	`XP_057773998.1`
3	Nucleoplasm	核质	0.20000	`XP_057773998.1`
4	Chromosome	染色体	0.00000	`XP_057773998.1`
5	Centromere	着丝粒	0.00000	`XP_057773998.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19375267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:19376484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr7:19376584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr7:19376616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:19376735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:19376745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr7:19376868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr7:19377071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C3
`Chr7:19377144`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C65
`Chr7:19377144`	`GA`	`G`	1bp_deletion	CDS_variant	1	C65
`Chr7:19377227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C3
`Chr7:19377287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773998.1

1513 aa

756

1513

PWWP

CTK3

CID

PF00855 PWWP 21-105 aa PF12243 CTK3 844-961 aa PF04818 CID 846-967 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773998.1`	Pfam	`PF00855`	PWWP	Domain	21	105	7.6e-17	62.3	PWWP domain
`XP_057773998.1`	Pfam	`PF12243`	CTK3	Repeat	844	961	1.1e-10	42.4	CTD kinase subunit gamma CTK3
`XP_057773998.1`	Pfam	`PF04818`	CID	Repeat	846	967	1.8e-16	61.2	CID domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009091599.1
AAATATTTTCTCTTTTATTTTTGAGAGGAGATATTACAGAATACATACATGCTTGCGCGCACTGTATTCGTCTCTCTCTCTCTCATCTACCTCCTCCACCACCACCACCACCGCCTCAGCATCCTGCATGCAAATTGGCCTTCTCTTCTGCTCTATCTCCGTGATCGCCGCAGCTACCGACCGCCGCGGACTGACGCCGTTTCAGGGGGCCTGTTGCCCCCGGACATCTGTTGTTTTCGCTAGGGTTCTTCCGATTTTTC...

XR_009091597.1
AAATATTTTCTCTTTTATTTTTGAGAGGAGATATTACAGAATACATACATGCTTGCGCGCACTGTATTCGTCTCTCTCTCTCTCATCTACCTCCTCCACCACCACCACCACCGCCTCAGCATCCTGCATGCAAATTGGCCTTCTCTTCTGCTCTATCTCCGTGATCGCCGCAGCTACCGACCGCCGCGGACTGACGCCGTTTCAGGGGGCCTGTTGCCCCCGGACATCTGTTGTTTTCGCTAGGGTTCTTCCGATTTTTC...

CDS

1 records

下载 CDS FASTA

LOC130993207
ATGGCTCCGGGGCGCAGGCGCGGAGCGAAGGGGGTTAAGACGAAGACCGAGTTGAGCTTGGGCGAGCTCGTTCTCGCCAAAGTTAAGGGTTTCCCCGCTTGGCCTGCCAAGATAAGCAGACCTGAAGATTGGCAGCGTGTGCCTGATCCTAGAAAATGCTTCGTCCAGTTCTTTGGTACAGCAGAAATAGCTTTTGTTGCACCTGGGGATATTCAGACATTCACGAATGAAGCGAAAAATAAATTGTCAGCTCGATGCCT...

Protein

1 records

下载 Protein FASTA

XP_057773998.1
MAPGRRRGAKGVKTKTELSLGELVLAKVKGFPAWPAKISRPEDWQRVPDPRKCFVQFFGTAEIAFVAPGDIQTFTNEAKNKLSARCLGKTVKYFAQAVKEICEEFEELQQKRSSGVRDDNCTQTHPPEAHSVDPMVDEALDINQNNGIVPECKLEMKESDDLGSGLEHCPHKQDEVECQDVKPYLSDDVNRRLSPPVSLRKRNKFSSDHNNVVKDSLSVSSPSHHSLKKEDPLDIKVKGRYSDGSQNELTNGHRSKLAMG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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