Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002145`

染色体: Chr07 坐标: 19625516-19629527 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002145`
名称	SmilChr07G002145
描述	uncharacterized SmilChr07G002145
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19625516 - 19629527 / `-`

ID 对照

NCBI Gene ID	`LOC130993236`
GeneID	`130993236`
locus_tag	`-`
NCBI Name	`LOC130993236`
原始查询	`SmilChr07G002145`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759]; symbol=AT5G08580; hit=AT5G08580; species=arabidopsis; confidence=high
产物	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759]; symbol=AT5G08580; hit=AT5G08580; species=arabidopsis; confidence=high
Arabidopsis	`AT5G08580` (AT5G08580) Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759] identity=58.1; qcov=1.01; evalue=1.37e-144; confidence=high
Rice	`Os02g0221800` - identity=52.2; qcov=0.775; evalue=1.11e-91; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0005783 (endoplasmic reticulum)
KEGG	-
Pfam	PF10591 (SPARC_Ca_bdg); PF13202 (EF-hand_5); PF13499 (EF-hand_7)
InterPro	-
eggNOG	-
NR	GeneID:130993236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057774038.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057774039.1`
3	Endoplasmic reticulum lumen	内质网腔	0.40000	`XP_057774038.1`
4	Melanosome	Melanosome	0.20000	`XP_057774038.1`
5	Nucleus	细胞核	0.00000	`XP_057774039.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19627086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:19627088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B49,B60,B79,C36
`Chr7:19628886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:19628948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B49,B60,B79,C36
`Chr7:19629211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774038.1

386 aa

193

386

EF-hand_5

SPARC_Ca_bdg

EF-hand_7

EF-hand_5

PF13202 EF-hand_5 214-234 aa PF10591 SPARC_Ca_bdg 281-358 aa PF13499 EF-hand_7 298-359 aa PF13202 EF-hand_5 340-357 aa

XP_057774039.1

356 aa

178

356

EF-hand_5

PF13202 EF-hand_5 214-234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774038.1`	Pfam	`PF13202`	EF-hand_5	Domain	214	234	8.9e-13	47.8	EF hand
`XP_057774038.1`	Pfam	`PF10591`	SPARC_Ca_bdg	Domain	281	358	4e-09	37.5	Secreted protein acidic and rich in cysteine Ca binding region
`XP_057774038.1`	Pfam	`PF13499`	EF-hand_7	Domain	298	359	5.6e-21	75.4	EF-hand domain pair
`XP_057774038.1`	Pfam	`PF13202`	EF-hand_5	Domain	340	357	8.9e-13	47.8	EF hand
`XP_057774039.1`	Pfam	`PF13202`	EF-hand_5	Domain	214	234	1e-08	35.0	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918055.1
ATAAGTTATTTCATTAATGATTATTGGTCTAACATTCATACTATAATTGAATCCCTCTAATTTTAGTTATCTGAAGTGTAATTACTAAAAAAGGCAGTAATCAGAAACAACAAATTAGAAAAGATAAAAAAGAAATGCAAATTAGGAAAAGCGAAGGAATCGAATTCGGTTTCAGCTTGGCTTTTACTTGAATCCCTAGAGTCAGAGAGAGAAACAATCGAGTTGAGCTCGCATGGGAGTCTAGAGAGAAACACATTGGC...

XM_057918056.1
AATCCCTCTAATTTTAGTTATCTGAAGTGTAATTACTAAAAAAGGCAGTAATCAGAAACAACAAATTAGAAAAGATAAAAAAGAAATGCAAATTAGGAAAAGCGAAGGAATCGAATTCGGTTTCAGCTTGGCTTTTACTTGAATCCCTAGAGTCAGAGAGAGAAACAATCGAGTTGAGCTCGCATGGGAGTCTAGAGAGAAACACATTGGCATTGGCATGCAATTGTGATGGGGAAATACAATCTCATCATCTACATTAC...

CDS

2 records

下载 CDS FASTA

LOC130993236
ATGGGGAAATACAATCTCATCATCTACATTACGGTGGCCGTAGGGCTCCTGCTCCTCGTCTCCCGCTCCTCCCACAAATCCAAGCCCCAGGGCCACCGCCGCCGCCTCAAAATCCGCACGCACTTCCCCTTCGCCCCGCCGGCCGACCCCCACCACCACCACAACCCCCCGCCCGCATTTGATCCCATCGTGTCCGAGATCGAGCTCCGCCGCGAGGACAGGCAATGGGAGCACCTCTACTTCCAGACGCACCACCACGA...

Protein

2 records

下载 Protein FASTA

XP_057774038.1
MGKYNLIIYITVAVGLLLLVSRSSHKSKPQGHRRRLKIRTHFPFAPPADPHHHHNPPPAFDPIVSEIELRREDRQWEHLYFQTHHHEPPSASPAPLPAPAHESQPEWEDFADAEDYLNDEERFNVTNRLMLLFPKIDVDPANGYVSESELIQWNLQQSRKEAMHRSQREMNTHDKDNDGLVSYAEYEAPSWVRNANADNTAFGYDFGWWKEDHFNASDADGDGHLNITEFNDFLHPADATNPKLLLWLCKEEIRERDGDK...

XP_057774039.1
MGKYNLIIYITVAVGLLLLVSRSSHKSKPQGHRRRLKIRTHFPFAPPADPHHHHNPPPAFDPIVSEIELRREDRQWEHLYFQTHHHEPPSASPAPLPAPAHESQPEWEDFADAEDYLNDEERFNVTNRLMLLFPKIDVDPANGYVSESELIQWNLQQSRKEAMHRSQREMNTHDKDNDGLVSYAEYEAPSWVRNANADNTAFGYDFGWWKEDHFNASDADGDGHLNITEFNDFLHPADATNPKLLLWLCKEEIRERDGDK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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