当前解析结果
SmilChr07G002146| 统一新 Gene ID | SmilChr07G002146 |
|---|---|
| 名称 | SmilChr07G002146 |
| 描述 | biotin carboxylase 2, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19629706 - 19638300 / + |
| NCBI Gene ID | LOC130993228 |
|---|---|
| GeneID | 130993228 |
| locus_tag | - |
| NCBI Name | LOC130993228 |
| 原始查询 | SmilChr07G002146 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | biotin carboxylase 2, chloroplastic |
| 产物 | biotin carboxylase 2%2C chloroplastic |
| Arabidopsis | AT5G35360 (CAC2)acetyl Co-enzyme a carboxylase biotin carboxylase subunit [Source:NCBI gene (formerly Entrezgene);Acc:833497] identity=83.8; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0605800 (OsL55)- identity=48.2; qcov=0.836; evalue=4.02e-147; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016874 (ligase activity); GO:0046872 (metal ion binding) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00289 (Biotin_carb_N); PF02222 (ATP-grasp); PF02785 (Biotin_carb_C); PF02786 (CPSase_L_D2); PF07478 (Dala_Dala_lig_C); PF08443 (RimK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993228 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774022.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057774022.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057774022.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774022.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774022.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19634964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B131,B59,C12 |
Chr7:19635236 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B69 |
Chr7:19635662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr7:19635704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:19635979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,D11 |
Chr7:19635999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B26,D4 |
Chr7:19636272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:19636370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:19636421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,B47 |
Chr7:19636779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C83 |
Chr7:19636782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B59,C12 |
Chr7:19636786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B136 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774022.1PF00289
Biotin_carb_N 70-177 aa
PF02786
CPSase_L_D2 182-389 aa
PF08443
RimK 203-374 aa
PF02222
ATP-grasp 204-359 aa
PF07478
Dala_Dala_lig_C 208-358 aa
PF02785
Biotin_carb_C 403-509 aa
XP_057774023.1PF00289
Biotin_carb_N 70-177 aa
PF02786
CPSase_L_D2 182-389 aa
PF08443
RimK 203-374 aa
PF02222
ATP-grasp 204-359 aa
PF07478
Dala_Dala_lig_C 208-358 aa
PF02785
Biotin_carb_C 403-509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774022.1 |
Pfam | PF00289 |
Biotin_carb_N | Domain | 70 | 177 | 4.2e-41 | 140.6 | Biotin carboxylase, N-terminal domain |
XP_057774022.1 |
Pfam | PF02786 |
CPSase_L_D2 | Domain | 182 | 389 | 2.5e-81 | 273.0 | Carbamoyl-phosphate synthase L chain, ATP binding domain |
XP_057774022.1 |
Pfam | PF08443 |
RimK | Domain | 203 | 374 | 0.00013 | 22.4 | RimK-like ATP-grasp domain |
XP_057774022.1 |
Pfam | PF02222 |
ATP-grasp | Domain | 204 | 359 | 1.7e-11 | 44.8 | ATP-grasp domain |
XP_057774022.1 |
Pfam | PF07478 |
Dala_Dala_lig_C | Family | 208 | 358 | 2.5e-07 | 31.1 | D-ala D-ala ligase C-terminus |
XP_057774022.1 |
Pfam | PF02785 |
Biotin_carb_C | Domain | 403 | 509 | 5.2e-39 | 133.4 | Biotin carboxylase C-terminal domain |
XP_057774023.1 |
Pfam | PF00289 |
Biotin_carb_N | Domain | 70 | 177 | 4.2e-41 | 140.6 | Biotin carboxylase, N-terminal domain |
XP_057774023.1 |
Pfam | PF02786 |
CPSase_L_D2 | Domain | 182 | 389 | 2.5e-81 | 273.0 | Carbamoyl-phosphate synthase L chain, ATP binding domain |
XP_057774023.1 |
Pfam | PF08443 |
RimK | Domain | 203 | 374 | 0.00013 | 22.4 | RimK-like ATP-grasp domain |
XP_057774023.1 |
Pfam | PF02222 |
ATP-grasp | Domain | 204 | 359 | 1.7e-11 | 44.8 | ATP-grasp domain |
XP_057774023.1 |
Pfam | PF07478 |
Dala_Dala_lig_C | Family | 208 | 358 | 2.5e-07 | 31.1 | D-ala D-ala ligase C-terminus |
XP_057774023.1 |
Pfam | PF02785 |
Biotin_carb_C | Domain | 403 | 509 | 5.2e-39 | 133.4 | Biotin carboxylase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。