Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002151`

染色体: Chr07 坐标: 19675987-19679627 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002151`
名称	SmilChr07G002151
描述	FAD synthetase 1, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19675987 - 19679627 / `-`

ID 对照

NCBI Gene ID	`LOC130993238`
GeneID	`130993238`
locus_tag	`-`
NCBI Name	`LOC130993238`
原始查询	`SmilChr07G002151`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FAD synthetase 1, chloroplastic
产物	FAD synthetase 1%2C chloroplastic
Arabidopsis	`AT5G23330` (AT5G23330) Nucleotidylyl transferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832397] identity=60.1; qcov=0.967; evalue=2.22e-121; confidence=high
Rice	`Os03g0801700` (RIBF) - identity=56; qcov=0.997; evalue=2.06e-108; confidence=high
GO	GO:0003919 (FMN adenylyltransferase activity); GO:0004671 (protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity); GO:0005783 (endoplasmic reticulum); GO:0006481 (C-terminal protein methylation); GO:0009231 (riboflavin biosynthetic process)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01467 (CTP_transf_like); PF06574 (FAD_syn); PF28794 (RIBF1-2_C)
InterPro	-
eggNOG	-
NR	GeneID:130993238

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774040.1`
2	Cytoplasm	细胞质	1.00000	`XP_057774041.1`
3	Nucleus	细胞核	0.60000	`XP_057774041.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057774040.1`
5	Chromosome	染色体	0.00000	`XP_057774041.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19676416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B107,B132,C71
`Chr7:19676507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr7:19676528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr7:19676655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,C32,C39,C68
`Chr7:19677072`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C23
`Chr7:19679032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:19679052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,B35,C16,C4
`Chr7:19679262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B123,B47,B52,B86
`Chr7:19679268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B66,C12,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774040.1

373 aa

186

373

FAD_syn

CTP_transf_like

RIBF1-2_C

PF06574 FAD_syn 100-242 aa PF01467 CTP_transf_like 104-264 aa PF28794 RIBF1-2_C 282-371 aa

XP_057774041.1

301 aa

150

301

CTP_transf_like

FAD_syn

RIBF1-2_C

PF01467 CTP_transf_like 32-192 aa PF06574 FAD_syn 107-170 aa PF28794 RIBF1-2_C 210-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774040.1`	Pfam	`PF06574`	FAD_syn	Family	100	242	9.5e-14	52.2	FAD synthetase
`XP_057774040.1`	Pfam	`PF01467`	CTP_transf_like	Domain	104	264	0.00011	23.1	Cytidylyltransferase-like
`XP_057774040.1`	Pfam	`PF28794`	RIBF1-2_C	Domain	282	371	5.1e-34	116.9	FAD synthetase 1/2, C-terminal domain
`XP_057774041.1`	Pfam	`PF01467`	CTP_transf_like	Domain	32	192	6.3e-05	23.9	Cytidylyltransferase-like
`XP_057774041.1`	Pfam	`PF06574`	FAD_syn	Family	107	170	4.5e-14	53.3	FAD synthetase
`XP_057774041.1`	Pfam	`PF28794`	RIBF1-2_C	Domain	210	299	3.5e-34	117.5	FAD synthetase 1/2, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918057.1
GAAAGACTTGAAGAAATCACGCATAATTGAAGAAATTTCGCATAATTTGAATTCCAATGGATTAATTTAAGATAGAGTGGTGAGATAGTGTTATACAAGTATCTTTTGTGTCTAGAAAAAACCTTGAAATTTTGGTTATTTGGAAATGGTCCTTGAAGTTTGGCGAATCTCAAAAGAGTCATTCAAGTTTGAAGTAATGGCAAAAGGTCTCGATTGGAGAGAAAACCCTCTACCCCGGATAAGCATTCAGCAACAATGGC...

XM_057918058.1
AGTCATTCAAGTTTGAAGTAATGGCAAAAGGTCTCGATTGGAGAGAAAACCCTCTACCCCGGATAAGCATTCAGCAACAATGGCCAACCAAATTGGCCACAACGCCCATTCTCGCCGCTAAAACTCCCACAAATTACTCCTCGTTTTTCTTGGCAGCTGCTGCTGTCGCAGGAAAACAATGATGATGGGCGGCTGCCGCAGTTACTACAACCCTCGCCAATTCGGGAGCTGCACCATCAAACGCTGCCGTTCTTGTCTCG...

CDS

2 records

下载 CDS FASTA

LOC130993238
ATGATGATGGGCGGCTGCCGCAGTTACTACAACCCTCGCCAATTCGGGAGCTGCACCATCAAACGCTGCCGTTCTTGTCTCGACAGAGCTGCTCCGCCTAGGTTTCGTTGCTCCTCCAGAAGATTTTTGGGATTCAAGTTGTCGGGCTCCAATGCTTCGTCTGTTGCCAGTAGCGACGACGATTTAGCCCGACTTTCTTTCATCAACGACGATGCCTCTCAGCCTCCCCTCTTCTCAGAGTGCTTCAGCCCAGCTGAAAA...

LOC130993238
ATGCCTCTCAGCCTCCCCTCTTCTCAGAGTGCTTCAGCTGAAAATGGTGCGGATCTTCCATCTGAAAGAGTCTCAGTAGCAGGAGGAATAGTAGCACTGGGAAAGTTTGATGCCCTTCACATCGGTCATCGGGAGCTTGCAATCCAAGCAGCAAAGATTGGAGTTCCATATCTGATGTCATTTGTTGGAATGGGAGAGGTACTTGGATGGGAACCTAGGGCTCCTATAGTGGCAAGAAGTGACCGGAAGCGTGTTCTTTC...

Protein

2 records

下载 Protein FASTA

XP_057774040.1
MMMGGCRSYYNPRQFGSCTIKRCRSCLDRAAPPRFRCSSRRFLGFKLSGSNASSVASSDDDLARLSFINDDASQPPLFSECFSPAENGADLPSERVSVAGGIVALGKFDALHIGHRELAIQAAKIGVPYLMSFVGMGEVLGWEPRAPIVARSDRKRVLSSWAPFCGNVTPKEVEVEFSQVRYLTPQQFAERLAVDLGVCGVVAGENYRFGYRAAGDSSDLVRLCDEYGMKACIINTVMDKHQHSTDMGSSSSQERGQVSS...

XP_057774041.1
MPLSLPSSQSASAENGADLPSERVSVAGGIVALGKFDALHIGHRELAIQAAKIGVPYLMSFVGMGEVLGWEPRAPIVARSDRKRVLSSWAPFCGNVTPKEVEVEFSQVRYLTPQQFAERLAVDLGVCGVVAGENYRFGYRAAGDSSDLVRLCDEYGMKACIINTVMDKHQHSTDMGSSSSQERGQVSSTRVRHALANGDMSYVSELLGRHHRLMLMVRNKEDIFSDRKRLSIKCRPCLLNLSPKEGLYENCSLVVGDKNV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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