当前解析结果
SmilChr07G002177| 统一新 Gene ID | SmilChr07G002177 |
|---|---|
| 名称 | SmilChr07G002177 |
| 描述 | septin and tuftelin-interacting protein 1 homolog 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19944295 - 19947503 / - |
| NCBI Gene ID | LOC130993258 |
|---|---|
| GeneID | 130993258 |
| locus_tag | - |
| NCBI Name | LOC130993258 |
| 原始查询 | SmilChr07G002177 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | septin and tuftelin-interacting protein 1 homolog 1-like |
| 产物 | septin and tuftelin-interacting protein 1 homolog 1-like |
| Arabidopsis | AT1G17070 (STIPL1)GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838277] identity=51.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os12g0615800- identity=47.5; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000390 (spliceosomal complex disassembly); GO:0003676 (nucleic acid binding); GO:0071008 (U2-type post-mRNA release spliceosomal complex) |
| KEGG | - |
| Pfam | PF01585 (G-patch); PF07842 (GCFC); PF12457 (TIP_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993258 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774064.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057774064.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057774064.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057774064.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057774064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19945491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr7:19945733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B5,B99,C49,C71 |
Chr7:19945815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,C12,D10 |
Chr7:19945914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B81,C35 |
Chr7:19945931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr7:19946028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,D11 |
Chr7:19946304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B128,B86,C5,C52,C53 |
Chr7:19946382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B27,C29,C77 |
Chr7:19946397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,D3 |
Chr7:19946574 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B81,B87 |
Chr7:19946574 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B81,B87 |
Chr7:19946764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774064.1PF12457
TIP_N 4-105 aa
PF01585
G-patch 184-225 aa
PF07842
GCFC 399-665 aa
XP_057774065.1PF12457
TIP_N 4-105 aa
PF01585
G-patch 184-225 aa
PF07842
GCFC 399-665 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774064.1 |
Pfam | PF12457 |
TIP_N | Family | 4 | 105 | 1.7e-22 | 80.4 | Tuftelin interacting protein N terminal |
XP_057774064.1 |
Pfam | PF01585 |
G-patch | Family | 184 | 225 | 2.5e-14 | 53.6 | G-patch domain |
XP_057774064.1 |
Pfam | PF07842 |
GCFC | Family | 399 | 665 | 6.6e-82 | 275.9 | GC-rich sequence DNA-binding factor-like protein |
XP_057774065.1 |
Pfam | PF12457 |
TIP_N | Family | 4 | 105 | 1.7e-22 | 80.4 | Tuftelin interacting protein N terminal |
XP_057774065.1 |
Pfam | PF01585 |
G-patch | Family | 184 | 225 | 2.5e-14 | 53.6 | G-patch domain |
XP_057774065.1 |
Pfam | PF07842 |
GCFC | Family | 399 | 665 | 6.6e-82 | 275.9 | GC-rich sequence DNA-binding factor-like protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。