Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002181`

染色体: Chr07 坐标: 20024202-20033574 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002181`
名称	SmilChr07G002181
描述	uncharacterized SmilChr07G002181
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20024202 - 20033574 / `+`

ID 对照

NCBI Gene ID	`LOC130993263`
GeneID	`130993263`
locus_tag	`-`
NCBI Name	`LOC130993263`
原始查询	`SmilChr07G002181`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821192]; symbol=AT3G02890; hit=AT3G02890; species=arabidopsis; confidence=medium
产物	RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821192]; symbol=AT3G02890; hit=AT3G02890; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G02890` (AT3G02890) RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821192] identity=36.7; qcov=0.592; evalue=2.04e-117; confidence=medium
Rice	`Os11g0292050` - identity=71.7; qcov=0.04; evalue=4.22e-23; confidence=weak
GO	-
KEGG	-
Pfam	PF23121 (SPOC_AIPP2)
InterPro	-
eggNOG	-
NR	GeneID:130993263

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774073.1`
2	Chromosome	染色体	0.00000	`XP_057774073.1`
3	Centromere	着丝粒	0.00000	`XP_057774073.1`
4	Chromatin	染色质	0.00000	`XP_057774073.1`
5	Telomere	端粒	0.00000	`XP_057774073.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20026936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr7:20027158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B85,C38
`Chr7:20027219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:20027305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:20027309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr7:20027559`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,C65
`Chr7:20027619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C16
`Chr7:20027631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:20027697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B108,B35
`Chr7:20027711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:20028871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:20029455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774073.1

1449 aa

724

1449

SPOC_AIPP2

PF23121 SPOC_AIPP2 900-1031 aa

XP_057774074.1

1330 aa

665

1330

SPOC_AIPP2

PF23121 SPOC_AIPP2 781-912 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774073.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	900	1031	6.2e-49	166.3	AIPP2, SPOC-like domain
`XP_057774074.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	781	912	5.7e-49	166.4	AIPP2, SPOC-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918090.1
TATAAGGACAGATTGTGTAATATCTGTATTTTCCTGTAGAGAGAGAGAAATATTTTGGAGAGAGAGAGGAAAGAACTTGTTGAAACTCGGCAACACTGCCAAAACCATCAAACGCCGATACAAACCTACAATAACTCCCCTTCTATTTCCTGTTGATTTCTGGCAAACATTATCTTTGAAGCAAATTCCACAAGTTTTATATTGGGGATTTTTTCCAGATCCTTTAATTATACATGTAAATTCCAGTGAATGAATTTCGA...

XM_057918091.1
TTACCCCCGTATTGAGAGGAAACATTAGGATGCAAGGACCAAGTGATGAAGCAAATTGTGACTCACTAACCAATATGGTGAGATAATATCCGGTGACATCTGAAAATAGCAGCCATTGCTCCGGTAGAAGCTCAAAGGACTATCGAGGGAAGTCTGGGACATGTAATGTGTGTTCTGCTCCTTGCTCGTCCTGCTTTCATGTTAATAAGGCTCTACTAAAATCAAACAATGAGCGTGGTGGAGAAACCTGTACTGGGAAT...

CDS

2 records

下载 CDS FASTA

LOC130993263
ATGAGAAATCGGAGAGAGCGAACTCTCCAAGACCTATGCGATGTCACTCCCACTCTATATCAGCCGCAGATTACCCCCGTATTGAGAGGAAACATTAGGATGCAAGGACCAAGTGATGAAGCAAATTGTGACTCACTAACCAATATGGTGACATCTGAAAATAGCAGCCATTGCTCCGGTAGAAGCTCAAAGGACTATCGAGGGAAGTCTGGGACATGTAATGTGTGTTCTGCTCCTTGCTCGTCCTGCTTTCATGTTAA...

LOC130993263
ATGGATTCAACTGCTGATTCTTTTTCTGGAAATGCAGCAGGCAAGGCTTCCTCAAGGACTTCCAATGCATCCAATGATAGTATGGTGCACTCAAAGTGCGACGGTCGGAGATCTCCTGAAGGGCATGATGATTGCTTGTCATGTGTCAGTGGAACTGATGAACAGTTGAATAGAAAATCTGATACGGAGGATAGTGGGAATAAGTGTAATAAGCAGAACACTGAAGAAATTTCTAGGAAGATGTCACCTAGTAGCTCACA...

Protein

2 records

下载 Protein FASTA

XP_057774073.1
MRNRRERTLQDLCDVTPTLYQPQITPVLRGNIRMQGPSDEANCDSLTNMVTSENSSHCSGRSSKDYRGKSGTCNVCSAPCSSCFHVNKALLKSNNERGGETCTGNTETGQLSILSTVGGMDSTADSFSGNAAGKASSRTSNASNDSMVHSKCDGRRSPEGHDDCLSCVSGTDEQLNRKSDTEDSGNKCNKQNTEEISRKMSPSSSQTGTYSQNSGTVGISLTKSTDDAADLQKAQNTSEASNGKNLPHEESPMNVNNDKP...

XP_057774074.1
MDSTADSFSGNAAGKASSRTSNASNDSMVHSKCDGRRSPEGHDDCLSCVSGTDEQLNRKSDTEDSGNKCNKQNTEEISRKMSPSSSQTGTYSQNSGTVGISLTKSTDDAADLQKAQNTSEASNGKNLPHEESPMNVNNDKPSVTNVEILKGSIEHLNSSSPNDASDDVCGDPPKTDLNSTEKNDDMEIELHPADESDDSDMVEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPEGEWLCEECKTLELV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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