当前解析结果
SmilChr07G002184| 统一新 Gene ID | SmilChr07G002184 |
|---|---|
| 名称 | SmilChr07G002184 |
| 描述 | uncharacterized SmilChr07G002184 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20054722 - 20055733 / + |
| NCBI Gene ID | LOC130993941 |
|---|---|
| GeneID | 130993941 |
| locus_tag | - |
| NCBI Name | LOC130993941 |
| 原始查询 | SmilChr07G002184 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0643433; species=rice; confidence=low |
| 产物 | hit=Os03g0643433; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=30.2; qcov=0.804; evalue=3.82e-29; confidence=low |
| Rice | Os03g0643433- identity=34.5; qcov=0.791; evalue=2.01e-37; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057774960.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057774960.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057774960.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774960.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774960.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20054747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B5,B62 |
Chr7:20054770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B81 |
Chr7:20054776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,C41,C74 |
Chr7:20054787 |
G |
GT |
1bp_insertion | frameshift_variant | 10 | B102,B111,B20,B22,B70,B93,C40,C55,C83,D5 |
Chr7:20054924 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B37,B59,C3 |
Chr7:20054924 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B37,B59,C3 |
Chr7:20054926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B54,B77,C87 |
Chr7:20054929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B59,B71 |
Chr7:20054931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B77 |
Chr7:20054969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B123,B72,C46,C73 |
Chr7:20054974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:20055048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,C59,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。