Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002204`

染色体: Chr07 坐标: 20285589-20293742 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002204`
名称	SmilChr07G002204
描述	uncharacterized SmilChr07G002204
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20285589 - 20293742 / `+`

ID 对照

NCBI Gene ID	`LOC130993284`
GeneID	`130993284`
locus_tag	`-`
NCBI Name	`LOC130993284`
原始查询	`SmilChr07G002204`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os02g0699400; species=rice; confidence=high
产物	hit=Os02g0699400; species=rice; confidence=high
Arabidopsis	`AT1G54130` (RSH3) RELA/SPOT homolog 3 [Source:NCBI gene (formerly Entrezgene);Acc:841853] identity=49.7; qcov=0.25; evalue=1.48e-39; confidence=weak
Rice	`Os02g0699400` - identity=64.7; qcov=1.01; evalue=0; confidence=high
GO	GO:0009507 (chloroplast); GO:0015969 (guanosine tetraphosphate metabolic process)
KEGG	-
Pfam	PF01966 (HD); PF02824 (TGS); PF04607 (RelA_SpoT); PF13328 (HD_4); PF24500 (DUF7589)
InterPro	-
eggNOG	-
NR	GeneID:130993284

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774099.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057774099.1`
3	Nucleus	细胞核	0.00000	`XP_057774099.1`
4	Chromosome	染色体	0.00000	`XP_057774099.1`
5	Centromere	着丝粒	0.00000	`XP_057774099.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20285673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:20285774`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B118
`Chr7:20285774`	`TC`	`T`	1bp_deletion	CDS_variant	1	B118
`Chr7:20285777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,C8
`Chr7:20287698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:20288720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr7:20289168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,C2,C77,D6
`Chr7:20289807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B61
`Chr7:20290797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr7:20290970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B121,B6,B85,C67
`Chr7:20291683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:20293092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774099.1

903 aa

452

903

HD_4

RelA_SpoT

DUF7589

TGS

PF13328 HD_4 177-344 aa PF01966 HD 196-312 aa PF04607 RelA_SpoT 487-606 aa PF24500 DUF7589 642-777 aa PF02824 TGS 849-901 aa

XP_057774100.1

895 aa

448

895

HD_4

RelA_SpoT

DUF7589

TGS

PF13328 HD_4 169-336 aa PF01966 HD 188-304 aa PF04607 RelA_SpoT 479-598 aa PF24500 DUF7589 634-769 aa PF02824 TGS 841-893 aa

XP_057774102.1

747 aa

374

747

HD_4

RelA_SpoT

DUF7589

TGS

PF13328 HD_4 21-188 aa PF01966 HD 40-156 aa PF04607 RelA_SpoT 331-450 aa PF24500 DUF7589 486-621 aa PF02824 TGS 693-745 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774099.1`	Pfam	`PF13328`	HD_4	Family	177	344	1e-44	152.8	HD domain
`XP_057774099.1`	Pfam	`PF01966`	HD	Family	196	312	9.4e-10	39.5	HD domain
`XP_057774099.1`	Pfam	`PF04607`	RelA_SpoT	Family	487	606	6.8e-36	123.7	Region found in RelA / SpoT proteins
`XP_057774099.1`	Pfam	`PF24500`	DUF7589	Domain	642	777	9.5e-76	253.3	Domain of unknown function (DUF7589)
`XP_057774099.1`	Pfam	`PF02824`	TGS	Domain	849	901	1.5e-07	32.1	TGS domain
`XP_057774100.1`	Pfam	`PF13328`	HD_4	Family	169	336	1e-44	152.8	HD domain
`XP_057774100.1`	Pfam	`PF01966`	HD	Family	188	304	9.8e-10	39.5	HD domain
`XP_057774100.1`	Pfam	`PF04607`	RelA_SpoT	Family	479	598	6.7e-36	123.7	Region found in RelA / SpoT proteins
`XP_057774100.1`	Pfam	`PF24500`	DUF7589	Domain	634	769	9.2e-76	253.4	Domain of unknown function (DUF7589)
`XP_057774100.1`	Pfam	`PF02824`	TGS	Domain	841	893	1.5e-07	32.1	TGS domain
`XP_057774102.1`	Pfam	`PF13328`	HD_4	Family	21	188	7.4e-45	153.2	HD domain
`XP_057774102.1`	Pfam	`PF01966`	HD	Family	40	156	7.5e-10	39.8	HD domain
`XP_057774102.1`	Pfam	`PF04607`	RelA_SpoT	Family	331	450	5.1e-36	124.1	Region found in RelA / SpoT proteins
`XP_057774102.1`	Pfam	`PF24500`	DUF7589	Domain	486	621	6.7e-76	253.8	Domain of unknown function (DUF7589)
`XP_057774102.1`	Pfam	`PF02824`	TGS	Domain	693	745	1.1e-07	32.5	TGS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918117.1
AGTGAGGCATAAAAATAGAAAATGAGTCATGTTAATAAAACTAAGATTAATAAGTATATTTAGTTAATGATGTCCTTCCCAATCCCAACCACTCGTTTCCCTCTTTCCCTTCACTCAAACAAAATATCACATCACTCCACATTTCGGATTCTTCTTCGATTCTATCTCACAAAAAAATGTGAGTTTCACCCCAAATCACAACCACCAGAGCAAGACATGTCTTCATGCCACTCTTCCACCATGTTTATCGGTCCCAGAAC...

XM_057918116.1
GTGAGGCATAAAAATAGAAAATGAGTCATGTTAATAAAACTAAGATTAATAAGTATATTTAGTTAATGATGTCCTTCCCAATCCCAACCACTCGTTTCCCTCTTTCCCTTCACTCAAACAAAATATCACATCACTCCACATTTCGGATTCTTCTTCGATTCTATCTCACAAAAAAATGTGAGTTTCACCCCAAATCACAACCACCAGAGCAAGACATGTCTTCATGCCACTCTTCCACCATGTTTATCGGTCCCAGAACT...

CDS

3 records

下载 CDS FASTA

LOC130993284
ATGATGTCCTTCCCAATCCCAACCACTCGTTTCCCTCTTTCCCTTCACTCAAACAAAATATCACATCACTCCACATTTCGGATTCTTCTTCGATTCTATCTCACAAAAAAATGTGAGTTTCACCCCAAATCACAACCACCAGAGCAAGACATGTCTTCATGCCACTCTTCCACCATGTTTATCGGTCCCAGAACTTCCATACTTATTCGGAAAAATCGATTTTTCATCGGTAAGTCTGCCAAGTTTCGCTGCGTTTTGGG...

Protein

3 records

下载 Protein FASTA

XP_057774099.1
MMSFPIPTTRFPLSLHSNKISHHSTFRILLRFYLTKKCEFHPKSQPPEQDMSSCHSSTMFIGPRTSILIRKNRFFIGKSAKFRCVLGPILPEFAVTASLSSGNMIAAAAGSSSAHGAVTSAITQVAVTAVAIASGACLSTKVEFLWPKVDEKPGSHILDGVDVTGYPIFNDAKVQKAIAFARKAHHGQTRRTGDPYLSHCIHTGKILAVLVPSYGKRAIDTIVAGILHDIVDDTCESLDSIEREFDSDVAKLVAGVSRLS...

XP_057774100.1
MMSFPIPTTRFPLSLHSNKISHHSTFRILLRFYLTKKCEFHPKSQPPEQDMSSCHSSTMFIGPRTSILIRKNRFFIGKSAKFRCVLGPILPEFAVTASLSSGNMIAAAAGSSSAHGAVTSAITQVAVTAVAIASGACLSTKVEFLWPKVDEKPDVTGYPIFNDAKVQKAIAFARKAHHGQTRRTGDPYLSHCIHTGKILAVLVPSYGKRAIDTIVAGILHDIVDDTCESLDSIEREFDSDVAKLVAGVSRLSYINQLLRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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