当前解析结果
SmilChr07G002225| 统一新 Gene ID | SmilChr07G002225 |
|---|---|
| 名称 | SmilChr07G002225 |
| 描述 | uncharacterized SmilChr07G002225 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20477539 - 20479968 / + |
| NCBI Gene ID | LOC130993301 |
|---|---|
| GeneID | 130993301 |
| locus_tag | - |
| NCBI Name | LOC130993301 |
| 原始查询 | SmilChr07G002225 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=high |
| 产物 | nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G03820 (NMD3)nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908] identity=66.7; qcov=0.982; evalue=0; confidence=high |
| Rice | Os10g0573900 (OsNMD3)- identity=54.9; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0000055 (ribosomal large subunit export from nucleus); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0043023 (ribosomal large subunit binding) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04981 (NMD3); PF21192 (OB_NMD3); PF21193 (NMD_SH3); PF29994 (NMD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993301 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774122.1 |
| 2 | Nucleolus | 核仁 | 0.60000 | XP_057774122.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057774122.1 |
| 4 | Cytoplasm | 细胞质 | 0.60000 | XP_057774122.1 |
| 5 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.20000 | XP_057774122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20478260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr7:20478358 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:20478440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C11,C13,C25,C69 |
Chr7:20478501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:20478842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:20479181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,B7,B82,C86 |
Chr7:20479303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B93 |
Chr7:20479337 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C3 |
Chr7:20479337 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C3 |
Chr7:20479619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:20479634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:20479649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774122.1PF29994
NMD3_N 19-149 aa
PF04981
NMD3 154-248 aa
PF21193
NMD_SH3 251-295 aa
PF21192
OB_NMD3 315-403 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774122.1 |
Pfam | PF29994 |
NMD3_N | Domain | 19 | 149 | 4.5e-33 | 115.3 | NMD3, N-terminal domain |
XP_057774122.1 |
Pfam | PF04981 |
NMD3 | Domain | 154 | 248 | 6.9e-32 | 110.6 | NMD3, second domain |
XP_057774122.1 |
Pfam | PF21193 |
NMD_SH3 | Domain | 251 | 295 | 7.3e-19 | 68.4 | NMD3 SH3 domain |
XP_057774122.1 |
Pfam | PF21192 |
OB_NMD3 | Domain | 315 | 403 | 5.8e-29 | 101.0 | NMD3 OB-fold domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。