当前解析结果
SmilChr07G002251| 统一新 Gene ID | SmilChr07G002251 |
|---|---|
| 名称 | SmilChr07G002251 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20672101 - 20675283 / - |
| NCBI Gene ID | LOC130993947 |
|---|---|
| GeneID | 130993947 |
| locus_tag | - |
| NCBI Name | LOC130993947 |
| 原始查询 | SmilChr07G002251 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29.9; qcov=0.961; evalue=9.69e-82; confidence=low |
| Rice | Os11g0681300- identity=28.2; qcov=0.905; evalue=8.4e-69; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774968.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057774968.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774968.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774968.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774968.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20672108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:20672221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:20672256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,D7 |
Chr7:20672271 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | D8 |
Chr7:20672271 |
GT |
G |
1bp_deletion | CDS_variant | 1 | D8 |
Chr7:20672304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B99 |
Chr7:20672331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:20672337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:20672380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:20672516 |
TA |
T |
1bp_deletion | frameshift_variant | 11 | B10,B34,B43,B47,B58,B75,C13,C56,C65,C76,C83 |
Chr7:20672624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:20672641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B34,B47,B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774968.1PF03101
FAR1 39-134 aa
PF21056
ZSWIM1-3_RNaseH-like 227-334 aa
PF10551
MULE 255-345 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774968.1 |
Pfam | PF03101 |
FAR1 | Domain | 39 | 134 | 1.7e-12 | 48.6 | FAR1 DNA-binding domain |
XP_057774968.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 227 | 334 | 1.4e-07 | 32.2 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057774968.1 |
Pfam | PF10551 |
MULE | Domain | 255 | 345 | 1.3e-23 | 83.9 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。