Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002252`

染色体: Chr07 坐标: 20707557-20712550 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002252`
名称	SmilChr07G002252
描述	polyadenylate-binding protein-interacting protein 12-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20707557 - 20712550 / `+`

ID 对照

NCBI Gene ID	`LOC130993334`
GeneID	`130993334`
locus_tag	`-`
NCBI Name	`LOC130993334`
原始查询	`SmilChr07G002252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein-interacting protein 12-like
产物	polyadenylate-binding protein-interacting protein 12-like
Arabidopsis	`AT1G32790` (CID11) CTC-interacting domain 11 [Source:NCBI gene (formerly Entrezgene);Acc:840173] identity=69; qcov=0.881; evalue=3.24e-156; confidence=high
Rice	`Os08g0116400` (P0470F10.8-1) - identity=74.4; qcov=0.803; evalue=4.18e-152; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF07145 (PAM2)
InterPro	-
eggNOG	-
NR	GeneID:130993334

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057774164.1`
2	Nucleus	细胞核	0.80000	`XP_057774164.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057774164.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057774164.1`
5	P-body	P-body	0.40000	`XP_057774164.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774164.1

370 aa

185

370

PAM2

RRM_1

PF07145 PAM2 96-111 aa PF00076 RRM_1 187-249 aa PF00076 RRM_1 284-351 aa

XP_057774165.1

370 aa

185

370

PAM2

RRM_1

PF07145 PAM2 96-111 aa PF00076 RRM_1 187-249 aa PF00076 RRM_1 284-351 aa

XP_057774166.1

370 aa

185

370

PAM2

RRM_1

PF07145 PAM2 96-111 aa PF00076 RRM_1 187-249 aa PF00076 RRM_1 284-351 aa

XP_057774168.1

370 aa

185

370

PAM2

RRM_1

PF07145 PAM2 96-111 aa PF00076 RRM_1 187-249 aa PF00076 RRM_1 284-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774164.1`	Pfam	`PF07145`	PAM2	Motif	96	111	1.1e-05	25.5	Ataxin-2 C-terminal region
`XP_057774164.1`	Pfam	`PF00076`	RRM_1	Domain	187	249	3.7e-23	81.9	RNA recognition motif
`XP_057774164.1`	Pfam	`PF00076`	RRM_1	Domain	284	351	3.7e-23	81.9	RNA recognition motif
`XP_057774165.1`	Pfam	`PF07145`	PAM2	Motif	96	111	1.1e-05	25.5	Ataxin-2 C-terminal region
`XP_057774165.1`	Pfam	`PF00076`	RRM_1	Domain	187	249	3.7e-23	81.9	RNA recognition motif
`XP_057774165.1`	Pfam	`PF00076`	RRM_1	Domain	284	351	3.7e-23	81.9	RNA recognition motif
`XP_057774166.1`	Pfam	`PF07145`	PAM2	Motif	96	111	1.1e-05	25.5	Ataxin-2 C-terminal region
`XP_057774166.1`	Pfam	`PF00076`	RRM_1	Domain	187	249	3.7e-23	81.9	RNA recognition motif
`XP_057774166.1`	Pfam	`PF00076`	RRM_1	Domain	284	351	3.7e-23	81.9	RNA recognition motif
`XP_057774168.1`	Pfam	`PF07145`	PAM2	Motif	96	111	1.1e-05	25.5	Ataxin-2 C-terminal region
`XP_057774168.1`	Pfam	`PF00076`	RRM_1	Domain	187	249	3.7e-23	81.9	RNA recognition motif
`XP_057774168.1`	Pfam	`PF00076`	RRM_1	Domain	284	351	3.7e-23	81.9	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918185.1
TTCCTCATCATATATTTTGGGGCGTTGTGAACAAAGTTCAGTGAAACAATAAATGAAGAAAAATCACGAAAACAGAAAAAAGAAGAAATAAATAAATAAATGTACTCAGTAAAATATTCTTGCAAATAGAATAAAATAATCTGGGGAAAAGACCCTTTTAGGGAATAGAAGAAAATAAAGTTGGGAAAACCAAAATCTTTGCGGAGGTTTTTGCTCGATCATGGCGGTGGTGGAAAATGCCAGGGCTAGCGCGCTGACGT...

XM_057918182.1
AACAATAAATGAAGAAAAATCACGAAAACAGAAAAAAGAAGAAATAAATAAATAAATGTACTCAGTAAAATATTCTTGCAAATAGAATAAAATAATCTGGGGAAAAGGTAAAGCTGCGCTCTGATTTTGCCTTCTCTTTTTGATTTCGTTTTTGATCTTCCAATTTCCGTGCTCAAATGGACACCATTTGAGCTATCAGACCCTTTTAGGGAATAGAAGAAAATAAAGTTGGGAAAACCAAAATCTTTGCGGAGGTTTTT...

CDS

4 records

下载 CDS FASTA

LOC130993334
ATGGCGGTGGTGGAAAATGCCAGGGCTAGCGCGCTGACGTCATCGAATCGCGAGAACGACGTCGTGGTGGATCATCGCCACCACCAGCAGTCATCAAAGGCCGCCGCTAACGGCCAAAAGTCAACGACGCCGACCGATCAGAATTTCCACCTGATTCAGCAGAAGATATCCAACGGCCATCATCAGCTCGCCGTCAACGGAAATGGAGTATCGCAAGAGGAGAAATTGGACGGCGAGGATGATGGAGGGGAGGGGTTTAA...

Protein

4 records

下载 Protein FASTA

XP_057774164.1
MAVVENARASALTSSNRENDVVVDHRHHQQSSKAAANGQKSTTPTDQNFHLIQQKISNGHHQLAVNGNGVSQEEKLDGEDDGGEGFKREMRDLEEMLSKLNPMAEEFVPPSLTSLVGGRQMLAPPQAAAAGHFGYNANGFMIQQLLSSGVPTENSFRRKKNGYTHGKRRMNSRTSMAQRDDVIKRTVYVSDIDHQVTEEQLAALFIGCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARNALSLAGTMLGYYPVRVLPSKT...

XP_057774165.1
MAVVENARASALTSSNRENDVVVDHRHHQQSSKAAANGQKSTTPTDQNFHLIQQKISNGHHQLAVNGNGVSQEEKLDGEDDGGEGFKREMRDLEEMLSKLNPMAEEFVPPSLTSLVGGRQMLAPPQAAAAGHFGYNANGFMIQQLLSSGVPTENSFRRKKNGYTHGKRRMNSRTSMAQRDDVIKRTVYVSDIDHQVTEEQLAALFIGCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARNALSLAGTMLGYYPVRVLPSKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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