当前解析结果
SmilChr07G002258| 统一新 Gene ID | SmilChr07G002258 |
|---|---|
| 名称 | SmilChr07G002258 |
| 描述 | CDPK-related kinase 4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20785435 - 20789340 / + |
| NCBI Gene ID | LOC130993340 |
|---|---|
| GeneID | 130993340 |
| locus_tag | - |
| NCBI Name | LOC130993340 |
| 原始查询 | SmilChr07G002258 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CDPK-related kinase 4-like |
| 产物 | CDPK-related kinase 4-like |
| Arabidopsis | AT5G24430 (AT5G24430)Calcium-dependent protein kinase (CDPK) family protein [Source:NCBI gene (formerly Entrezgene);Acc:832514] identity=66.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0714200 (CAMK)- identity=69.5; qcov=1.06; evalue=0; confidence=high |
| GO | GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993340 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774178.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057774178.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774178.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774178.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774178.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20785815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B120,B30,B84,C50 |
Chr7:20787223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr7:20787239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B70,C40,C55 |
Chr7:20787249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C12 |
Chr7:20787801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr7:20788275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B28,B65,C12 |
Chr7:20788302 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | B88 |
Chr7:20788302 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | B88 |
Chr7:20788424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B88,C14 |
Chr7:20788655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774178.1PF00069
Pkinase 135-397 aa
PF07714
PK_Tyr_Ser-Thr 136-389 aa
PF06293
Kdo 213-287 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774178.1 |
Pfam | PF00069 |
Pkinase | Domain | 135 | 397 | 2.6e-73 | 247.4 | Protein kinase domain |
XP_057774178.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 136 | 389 | 2.1e-34 | 119.8 | Protein tyrosine and serine/threonine kinase |
XP_057774178.1 |
Pfam | PF06293 |
Kdo | Family | 213 | 287 | 1e-05 | 25.8 | Lipopolysaccharide kinase (Kdo/WaaP) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。