Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002267`

染色体: Chr07 坐标: 20881855-20885018 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002267`
名称	SmilChr07G002267
描述	uncharacterized SmilChr07G002267
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20881855 - 20885018 / `+`

ID 对照

NCBI Gene ID	`LOC130993350`
GeneID	`130993350`
locus_tag	`-`
NCBI Name	`LOC130993350`
原始查询	`SmilChr07G002267`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828882]; symbol=AT4G27680; hit=AT4G27680; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828882]; symbol=AT4G27680; hit=AT4G27680; species=arabidopsis; confidence=high
Arabidopsis	`AT4G27680` (AT4G27680) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828882] identity=77.1; qcov=0.992; evalue=0; confidence=high
Rice	`Os06g0714500` - identity=71.3; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF01057 (Parvo_NS1); PF07728 (AAA_5); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:130993350

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057774190.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057774190.1`
3	Mitochondrion outer membrane	线粒体外膜	0.60000	`XP_057774190.1`
4	Peroxisome	过氧化物酶体	0.60000	`XP_057774190.1`
5	Peroxisome membrane	过氧化物酶体膜	0.40000	`XP_057774190.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20882125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:20883053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:20883904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:20884025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774190.1

392 aa

196

392

Parvo_NS1

AAA_5

AAA

AAA_lid_3

PF01057 Parvo_NS1 117-144 aa PF07728 AAA_5 122-245 aa PF00004 AAA 123-252 aa PF17862 AAA_lid_3 275-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774190.1`	Pfam	`PF01057`	Parvo_NS1	Domain	117	144	0.00022	21.0	Parvovirus non-structural protein NS1
`XP_057774190.1`	Pfam	`PF07728`	AAA_5	Domain	122	245	2.2e-07	31.7	AAA domain (dynein-related subfamily)
`XP_057774190.1`	Pfam	`PF00004`	AAA	Domain	123	252	7.1e-37	127.5	ATPase family associated with various cellular activities (AAA)
`XP_057774190.1`	Pfam	`PF17862`	AAA_lid_3	Domain	275	310	1e-10	41.7	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918207.1
AAATAACCGCCGCCAATAGGAAAGGGTGCCCTCGCCCCCAAGTTTTCTTCTGTATCCTTTCCCATAAAACCGCAGATAAAATTCCGAAATCCCTACCAGAAAAGGGGAGTGGAATCAAAATCAAGCAGAACCAATTCTCCAATATACAATGAGAAACAATTCGGGAGAGACAAAAATCGTGCAAGAGTTGATTCTGTACGCGGCGAGCGCCGCTCTCAGTTGTCTGGTGCTGTTCGTGGGGCTGAAGCAATTGGACCCCA...

CDS

1 records

下载 CDS FASTA

LOC130993350
ATGAGAAACAATTCGGGAGAGACAAAAATCGTGCAAGAGTTGATTCTGTACGCGGCGAGCGCCGCTCTCAGTTGTCTGGTGCTGTTCGTGGGGCTGAAGCAATTGGACCCCAATCGCGAAGCCTCCAAAAAGGCCCTAGAACAGAAGAAGGAGATCGCCAAGCGCTTAGGCCGTCCTCTTATTCAAACCAATTCGTATGAGGATATTGTAGCTTGTGATGTAGTCAACCCAGAGCACATAGATGTCAAATTTGACAGCAT...

Protein

1 records

下载 Protein FASTA

XP_057774190.1
MRNNSGETKIVQELILYAASAALSCLVLFVGLKQLDPNREASKKALEQKKEIAKRLGRPLIQTNSYEDIVACDVVNPEHIDVKFDSIGGLDAIKQALFELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIGNLMSKWFGDAQKLVTAVFTLAYKLQPAIIFIDEVDSFLGQRKSSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKDRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器