当前解析结果
SmilChr07G002268| 统一新 Gene ID | SmilChr07G002268 |
|---|---|
| 名称 | SmilChr07G002268 |
| 描述 | AAA-ATPase At2g46620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20896726 - 20898754 / + |
| NCBI Gene ID | LOC130993351 |
|---|---|
| GeneID | 130993351 |
| locus_tag | - |
| NCBI Name | LOC130993351 |
| 原始查询 | SmilChr07G002268 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-ATPase At2g46620-like |
| 产物 | AAA-ATPase At2g46620-like |
| Arabidopsis | AT2G46620 (AT2G46620)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819274] identity=57.53; qcov=0.953; evalue=0.0; confidence=high |
| Rice | Os03g0114400 (OSJNBa0090O10.13)- identity=47.47; qcov=0.912; evalue=4.69e-148; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF14363 (AAA_assoc); PF25568 (AAA_lid_At3g28540) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993351 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.40000 | XP_057774191.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057774191.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057774191.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057774191.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057774191.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20897332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:20897479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:20897612 |
ACG |
A |
2bp_deletion | frameshift_variant | 1 | C61 |
Chr7:20897612 |
ACG |
A |
2bp_deletion | CDS_variant | 1 | C61 |
Chr7:20897637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:20897673 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | B16,B36,B5,C40 |
Chr7:20897673 |
AT |
A |
1bp_deletion | CDS_variant | 4 | B16,B36,B5,C40 |
Chr7:20897723 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A1,B1,B103,B109,B113,B121,B123,B124,B126,B133,B134,B14,B17,B20,B24,B28,B4,B50,B56,B57,B63,B65,B69,B7,B85,B88,B93,B96,B99,C11,C15,C2,C50,C57,C58,C63,C64,C65,C66,C67,C68,C69,C76,C8,C84 |
Chr7:20897745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B16,B36,B5,C40 |
Chr7:20897757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr7:20897819 |
CTG |
C |
2bp_deletion | frameshift_variant | 1 | A22 |
Chr7:20897819 |
CTG |
C |
2bp_deletion | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774191.1PF14363
AAA_assoc 31-118 aa
PF00004
AAA 228-346 aa
PF25568
AAA_lid_At3g28540 347-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774191.1 |
Pfam | PF14363 |
AAA_assoc | Family | 31 | 118 | 4.2e-11 | 43.8 | Domain associated at C-terminal with AAA |
XP_057774191.1 |
Pfam | PF00004 |
AAA | Domain | 228 | 346 | 4.7e-13 | 50.4 | ATPase family associated with various cellular activities (AAA) |
XP_057774191.1 |
Pfam | PF25568 |
AAA_lid_At3g28540 | Domain | 347 | 409 | 5.7e-11 | 42.9 | At3g28540-like, AAA+ ATPase lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。