当前解析结果
SmilChr07G002321| 统一新 Gene ID | SmilChr07G002321 |
|---|---|
| 名称 | SmilChr07G002321 |
| 描述 | low affinity inorganic phosphate transporter 4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21480894 - 21482793 / + |
| NCBI Gene ID | LOC130993401 |
|---|---|
| GeneID | 130993401 |
| locus_tag | - |
| NCBI Name | LOC130993401 |
| 原始查询 | SmilChr07G002321 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | low affinity inorganic phosphate transporter 4-like |
| 产物 | low affinity inorganic phosphate transporter 4-like |
| Arabidopsis | AT3G54700 (PHT1;7)phosphate transporter 1;7 [Source:NCBI gene (formerly Entrezgene);Acc:824635] identity=60.3; qcov=0.975; evalue=0; confidence=high |
| Rice | Os01g0657100 (PT11)- identity=73.9; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0005315 (phosphate transmembrane transporter activity); GO:0006817 (phosphate ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993401 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774264.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057774264.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774264.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774264.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774264.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21481044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B56,B96,C82 |
Chr7:21481092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:21481133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B105,B118,D10 |
Chr7:21481182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B113,C46,C61,C84 |
Chr7:21481186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr7:21481335 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,A9,B136,B72,C4 |
Chr7:21481398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B33 |
Chr7:21481467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr7:21481515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr7:21481582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr7:21481689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:21481698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774264.1PF00083
Sugar_tr 26-503 aa
PF07690
MFS_1 70-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774264.1 |
Pfam | PF00083 |
Sugar_tr | Family | 26 | 503 | 1.2e-52 | 180.1 | Sugar (and other) transporter |
XP_057774264.1 |
Pfam | PF07690 |
MFS_1 | Family | 70 | 455 | 6.8e-23 | 81.9 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。