当前解析结果
SmilChr07G002325| 统一新 Gene ID | SmilChr07G002325 |
|---|---|
| 名称 | SmilChr07G002325 |
| 描述 | uncharacterized SmilChr07G002325 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21579651 - 21582794 / + |
| NCBI Gene ID | LOC130993407 |
|---|---|
| GeneID | 130993407 |
| locus_tag | - |
| NCBI Name | LOC130993407 |
| 原始查询 | SmilChr07G002325 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835412]; symbol=AT5G53310; hit=AT5G53310; species=arabidopsis; confidence=high |
| 产物 | myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835412]; symbol=AT5G53310; hit=AT5G53310; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G53310 (AT5G53310)myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835412] identity=62.6; qcov=1; evalue=2.06e-95; confidence=high |
| Rice | Os01g0621700- identity=69.8; qcov=0.778; evalue=1.71e-83; confidence=high |
| GO | GO:0003774 (cytoskeletal motor activity); GO:0016459 (myosin complex) |
| KEGG | - |
| Pfam | PF06017 (Myosin_TH1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993407 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774268.1 |
| 2 | Cell projection | 细胞突起 | 0.60000 | XP_057774268.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057774268.1 |
| 4 | Cell membrane | 细胞膜 | 0.40000 | XP_057774268.1 |
| 5 | Pseudopodium | Pseudopodium | 0.40000 | XP_057774268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21580173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B42,B43,B76 |
Chr7:21581495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr7:21581668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B56,B96,C82 |
Chr7:21582316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B30,B48,B84,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774268.1PF06017
Myosin_TH1 56-209 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774268.1 |
Pfam | PF06017 |
Myosin_TH1 | Domain | 56 | 209 | 9.6e-35 | 120.6 | Unconventional myosin tail, actin- and lipid-binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。