当前解析结果
SmilChr07G002332| 统一新 Gene ID | SmilChr07G002332 |
|---|---|
| 名称 | SmilChr07G002332 |
| 描述 | hevamine-A-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21626072 - 21627482 / + |
| NCBI Gene ID | LOC130993410 |
|---|---|
| GeneID | 130993410 |
| locus_tag | - |
| NCBI Name | LOC130993410 |
| 原始查询 | SmilChr07G002332 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hevamine-A-like |
| 产物 | hevamine-A-like |
| Arabidopsis | AT5G24090 (CHIA)chitinase A [Source:NCBI gene (formerly Entrezgene);Acc:832474] identity=54; qcov=0.943; evalue=4.08e-108; confidence=high |
| Rice | Os01g0660200 (C10728)- identity=54.1; qcov=0.959; evalue=2.51e-105; confidence=high |
| GO | GO:0004568 (chitinase activity); GO:0005576 (extracellular region); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00704 (Glyco_hydro_18) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993410 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057774272.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774272.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774272.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774272.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21626506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B19,B64,B71,B8 |
Chr7:21626589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:21626611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:21626697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:21626728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:21626784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:21626846 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr7:21626846 |
CT |
C |
1bp_deletion | CDS_variant | 1 | D10 |
Chr7:21627144 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | D3 |
Chr7:21627144 |
A |
AT |
1bp_insertion | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774272.1PF00704
Glyco_hydro_18 29-222 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774272.1 |
Pfam | PF00704 |
Glyco_hydro_18 | Domain | 29 | 222 | 2.4e-18 | 67.6 | Glycosyl hydrolases family 18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。