Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002355`

染色体: Chr07 坐标: 21859811-21861695 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002355`
名称	SmilChr07G002355
描述	beta-carotene hydroxylase 2, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	21859811 - 21861695 / `+`

ID 对照

NCBI Gene ID	`LOC130993429`
GeneID	`130993429`
locus_tag	`-`
NCBI Name	`LOC130993429`
原始查询	`SmilChr07G002355`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-carotene hydroxylase 2, chloroplastic-like
产物	beta-carotene hydroxylase 2%2C chloroplastic-like
Arabidopsis	`AT4G25700` (BETA-OHASE 1) beta-hydroxylase 1 [Source:NCBI gene (formerly Entrezgene);Acc:828675] identity=69.7; qcov=0.855; evalue=2.89e-148; confidence=high
Rice	`Os03g0125100` (DSM2) - identity=65.8; qcov=0.872; evalue=3.76e-131; confidence=high
GO	GO:0005506 (iron ion binding); GO:0009507 (chloroplast); GO:0010291 (beta-carotene 3-hydroxylase activity); GO:0016119 (carotene metabolic process); GO:0016123 (xanthophyll biosynthetic process)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04116 (FA_hydroxylase)
InterPro	-
eggNOG	-
NR	GeneID:130993429

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774293.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057774294.1`
3	Nucleus	细胞核	0.00000	`XP_057774293.1`
4	Chromosome	染色体	0.00000	`XP_057774293.1`
5	Centromere	着丝粒	0.00000	`XP_057774293.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:21860037`	`T`	`TG`	1bp_insertion	frameshift_variant	11	A24,B127,B25,B6,B63,B83,C35,C40,C56,C81,D8
`Chr7:21860111`	`T`	`TTC`	2bp_insertion	frameshift_variant	25	A11,A15,B120,B38,B39,B4,B60,B63,B67,B70,B77,C13,C14,C15,C3,C42,C49,C52,C56,C59,C64,C67,C7,C76,C83
`Chr7:21860138`	`G`	`GA`	1bp_insertion	frameshift_variant	106	A10,A13,A14,A15,A18,A19,A21,A22,A3,A6,A9,B10,B103,B104,B105,B107,B110,B111,B112,B114,B115,B117,B119,B123,B125,B126,B128,B13,B130,B135,B136,B137,B14,B2,B20,B21,B24,B32,B33,B37,B44,B47,B50,B51,B52,B53,B56,B57,B58,B59,B61,B62,B67,B68,B72,B73,B75,B80,B81,B82,B9,B93,B95,B96,B98,B99,C10,C12,C14,C16,C19,C22,C24,C26,C28,C29,C31,C33,C4,C41,C45,C46,C47,C48,C52,C53,C54,C55,C57,C58,C59,C6,C65,C7,C71,C73,C74,C77,C8,C84,C9,D1,D11,D3,D5,D7
`Chr7:21860142`	`TTA`	`T`	2bp_deletion	frameshift_variant	2	B125,B137
`Chr7:21860142`	`TTA`	`T`	2bp_deletion	CDS_variant	2	B125,B137
`Chr7:21860166`	`AC`	`A`	1bp_deletion	frameshift_variant	140	A1,A13,A14,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A6,A8,A9,B101,B105,B106,B107,B109,B11,B110,B111,B112,B114,B115,B117,B118,B121,B125,B126,B128,B130,B134,B136,B137,B138,B139,B14,B15,B16,B17,B19,B2,B20,B24,B26,B27,B28,B29,B3,B31,B33,B34,B35,B36,B37,B41,B45,B46,B47,B48,B5,B50,B53,B56,B57,B58,B59,B61,B62,B64,B65,B69,B7,B71,B75,B8,B80,B81,B82,B88,B89,B93,B94,B96,B99,C1,C10,C11,C16,C17,C19,C2,C20,C22,C23,C24,C25,C26,C29,C31,C32,C33,C37,C41,C42,C45,C46,C47,C50,C53,C54,C55,C57,C6,C60,C63,C68,C69,C71,C72,C73,C74,C75,C77,C8,C82,C84,C85,C86,C9,D1,D10,D3,D5,D6,D7
`Chr7:21860395`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C41
`Chr7:21860395`	`AG`	`A`	1bp_deletion	CDS_variant	1	C41
`Chr7:21860397`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	C41
`Chr7:21860397`	`AAG`	`A`	2bp_deletion	CDS_variant	1	C41
`Chr7:21860455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr7:21861281`	`CTT`	`C`	2bp_deletion	frameshift_variant	12	A20,B10,B130,B139,B88,C20,C27,C29,C40,C44,C55,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774294.1

359 aa

180

359

FA_hydroxylase

PF04116 FA_hydroxylase 202-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774294.1`	Pfam	`PF04116`	FA_hydroxylase	Domain	202	329	3.3e-14	54.2	Fatty acid hydroxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918311.1
AAAAAGAAGAGATTATGCTACTAAAGCAAACTCCTCCTATTCGTATATAAGTTTGGTCGTGGCTGCTTTATAAGTTTGAACTTTGAAGTCAATCAGCGATTGAATGAATAAATGAGAAGATGAAATAATTCTAGATTTATTATATGGAATATTTAATAGTAATAATAGTGGCAGTTGCGTAATTTTGGAGAAGTAGAGCACCAGAAAAAAAGAGGAGCTGAAATGTTGGTATATTTAAGGAGAATGAGCAACGAACACAT...

XM_057918310.1
AATGAATAAATGAGAAGATGAAATAATTCTAGATTTATTATATGGAATATTTAATAGTAATAATAGTGGCAGTTGCGTAATTTTGGAGAAGTAGAGCACCAGAAAAAAAGAGGAGCTGAAATGTTGGTATATTTAAGGAGAATGAGCAACGAACACATGAAAGCTAAGATGTGGTCTACGTCCTTCCACCCACTCATTTTCTCTCTCTCTCTCTCTCTCTCTTTAGAAGTTAAAACAAAACAACCACTACTAAACCCCCC...

CDS

2 records

下载 CDS FASTA

LOC130993429
ATGTTGGTATATTTAAGGAGAATGAGCAACGAACACATGAAAGCTAAGATGTGGTCTACGTCCTTCCACCCACTCATTTTCTCTCTCTCTCTCTCTCTCTCTTTAGAAGTTAAAACAAAACAACCACTACTAAACCCCCCCCTCCAAAATACACCTTCTATGGCGGCCGGGATTTCCGTCGCCACCACTCCGGGGGCCATACTCCGCTCCAGGCACAGCCCGAGGCCAGCTCTGCGGATTCCCCCTTCTCTCCAGAGAAT...

Protein

2 records

下载 Protein FASTA

XP_057774293.1
MLVYLRRMSNEHMKAKMWSTSFHPLIFSLSLSLSLEVKTKQPLLNPPLQNTPSMAAGISVATTPGAILRSRHSPRPALRIPPSLQRIHGILRSGRRRPNLTVCFVLEDEKLRAIQEPEEEEEESGGVGRAISLAESVAEKVAEKLARKKSERFTYLVAAVMSSFGITSMAIMAVYYRFAWHMEVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAIINAVPAIALLSYGFFHTGLVPGLCFGAGLGITVFG...

XP_057774294.1
MLVYLRRMSNEHMKAKMWSTSFHPLIFSLSLSLSLEVKTKQPLLNPPLQNTPSMAAGISVATTPGAILRSRHSPRPALRIPPSLQRIHGILRSGRRRPNLTVCFVLEDEKLRAIQEPEEEEEESGGVGRAISLAESVAEKVAEKLARKKSERFTYLVAAVMSSFGITSMAIMAVYYRFAWHMEGGEIPYTEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAIINAVPAIALLSYGFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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