Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002365

染色体: Chr07 坐标: 21950347-21952909 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002365
名称SmilChr07G002365
描述uncharacterized SmilChr07G002365
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向21950347 - 21952909 / -

ID 对照

NCBI Gene IDLOC130993445
GeneID130993445
locus_tag-
NCBI NameLOC130993445
原始查询SmilChr07G002365

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GOGO:0007346 (regulation of mitotic cell cycle)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130993445

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057774315.1
2 Cytoplasm 细胞质 0.20000 XP_057774315.1
3 Chromosome 染色体 0.00000 XP_057774315.1
4 Centromere 着丝粒 0.00000 XP_057774315.1
5 Chromatin 染色质 0.00000 XP_057774315.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:21950641 C T EMS_canonical_SNV CDS_variant 3 B86,B89,C75
Chr7:21950658 C T EMS_canonical_SNV CDS_variant 3 B86,C75,D11
Chr7:21950702 C T EMS_canonical_SNV CDS_variant 2 B86,C75
Chr7:21950710 C T EMS_canonical_SNV CDS_variant 2 B86,C75
Chr7:21950711 C T EMS_canonical_SNV CDS_variant 2 B86,C75
Chr7:21950719 G A EMS_canonical_SNV CDS_variant 1 C73
Chr7:21950993 C T EMS_canonical_SNV CDS_variant 4 B104,B86,B89,C75
Chr7:21951025 C T EMS_canonical_SNV CDS_variant 4 B104,B86,B89,C75
Chr7:21951047 G A EMS_canonical_SNV CDS_variant 4 B104,B86,B89,C75
Chr7:21951109 TC T 1bp_deletion frameshift_variant 4 B104,B86,B89,C75
Chr7:21951109 TC T 1bp_deletion CDS_variant 4 B104,B86,B89,C75
Chr7:21951268 C T EMS_canonical_SNV CDS_variant 4 B104,B86,B89,C75

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057918333.1
TACGACTCTACCGCCTTTTTATACACGGAGTAAAATTGAAAAGCCCCCAAATCAAAGAGCCCTATATTTTTCATAGCCGTTGAGATATCAAAGAGTAAACGAGCGCAACAGAAATCTATTTCCCTATTTGATCCAAGAATAATAAAAAAGAAGTTACCGAGCAAGAAACTTTGAAAATATACTATTCTGACTTTCAATCGAAGCTTCAGATAAGCACTCATGGCAACCCCAGCTCAACGCTTGATCCAAGATCAGAACCT...
XM_057918332.1
AAAGAGCCCTATATTTTTCATAGCCGTTGAGATATCAAAGAGTAAACGAGCGCAACAGAAATCTATTTCCCTATTTGATCCAAGAATAATAAAAAAGAAGTTACCGAGCAAGAAACTTTGAAAATATACTGTGAGTAATCTTTCTTGAACCCAGTAATTTTTCGCTGTGATTTTCATGGATGGTTATGGATGATGTGATCGGACTGTGTGTGCTCAATCTTGTATTCTGACTTTCAATCGAAGCTTCAGATAAGCACTCA...

CDS

2 records

下载 CDS FASTA
LOC130993445
ATGGCAACCCCAGCTCAACGCTTGATCCAAGATCAGAACCTAAACTTTCTCTACAGTGGCACTACTCCTGGAGGAAAGACTGATGTAGTAGCCAAAGCAGATAAGAGAGGTGGTCTTGGTGGAAGGAAAGCACTTAACGACATATCAAACTCAAGAAAGCCTTCTGCATTTCACTCCGTGAAGAAAGATGGCTCCATAAATGTCATCTCTATTGACAAAGATCCTTCAACTGTGAAAGGCAAATCATCCAAGGCACCTGA...
LOC130993445
ATGGCAACCCCAGCTCAACGCTTGATCCAAGATCAGAACCTAAACTTTCTCTACAGTGGCACTACTCCTGGAGGAAAGACTGATGTAGTAGCCAAAGCAGATAAGAGAGGTGGTCTTGGTGGAAGGAAAGCACTTAACGACATATCAAACTCAAGAAAGCCTTCTGCATTTCACTCCGTGAAGAAAGATGGCTCCATAAATGTCATCTCTATTGACAAAGATCCTTCAACTGTGAAAGGCAAATCATCCAAGGCACCTGA...

Protein

2 records

下载 Protein FASTA
XP_057774315.1
MATPAQRLIQDQNLNFLYSGTTPGGKTDVVAKADKRGGLGGRKALNDISNSRKPSAFHSVKKDGSINVISIDKDPSTVKGKSSKAPEKGRVGGRKALSDLTNSVKPRPKQIPCLGRKLNSVAEEAEERFLHNHQECIKAQTMTVDKDYFLKSVGLANDIAALPSVRKALPLSSKKVQHSKMGEMVELPSCCSPACRSPQSPKAPCTMSWEDDYFSDLMMIETPKLK
XP_057774316.1
MATPAQRLIQDQNLNFLYSGTTPGGKTDVVAKADKRGGLGGRKALNDISNSRKPSAFHSVKKDGSINVISIDKDPSTVKGKSSKAPEKGRVGGRKALSDLTNSVKPRPKQIPCLGRKLNSVAEEAEERFLHNHQECIKAQTMTVDKDYFLKSVGLANDIAALPSVRKALPLSSKKVQHSKMGEMVELPSCCSPACRSPQSPKAPCTMSWEDDYFSDLMMIETPKLK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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