Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002367`

染色体: Chr07 坐标: 21987701-21993685 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002367`
名称	SmilChr07G002367
描述	origin of replication complex subunit 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	21987701 - 21993685 / `+`

ID 对照

NCBI Gene ID	`LOC130993449`
GeneID	`130993449`
locus_tag	`-`
NCBI Name	`LOC130993449`
原始查询	`SmilChr07G002367`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	origin of replication complex subunit 2-like
产物	origin of replication complex subunit 2-like
Arabidopsis	`AT2G37560` (ORC2) origin recognition complex second largest subunit 2 [Source:NCBI gene (formerly Entrezgene);Acc:818332] identity=65.9; qcov=0.975; evalue=1.04e-173; confidence=high
Rice	`Os03g0184700` (OsORC2) - identity=61.6; qcov=0.994; evalue=1.27e-168; confidence=high
GO	GO:0003688 (DNA replication origin binding); GO:0005634 (nucleus); GO:0005664 (nuclear origin of replication recognition complex); GO:0006260 (DNA replication)
KEGG	-
Pfam	PF04084 (RecA-like_ORC2); PF24882 (WHD_ORC2)
InterPro	-
eggNOG	-
NR	GeneID:130993449

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774319.1`
2	Nucleoplasm	核质	1.00000	`XP_057774319.1`
3	Cytoplasm	细胞质	0.60000	`XP_057774319.1`
4	Chromosome	染色体	0.40000	`XP_057774322.1`
5	Cytosol	细胞质基质	0.40000	`XP_057774319.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:21990658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr7:21990681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:21990805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,A9,B136,B72,C4
`Chr7:21990806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:21991103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B107,B132,C5
`Chr7:21992745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr7:21992755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:21992814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:21993144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774319.1

386 aa

193

386

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 321-375 aa

XP_057774320.1

386 aa

193

386

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 321-375 aa

XP_057774321.1

386 aa

193

386

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 321-375 aa

XP_057774322.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

XP_057774323.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

XP_057774324.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774319.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	3.2e-51	174.1	Origin recognition complex subunit 2 RecA-like domain
`XP_057774319.1`	Pfam	`PF24882`	WHD_ORC2	Domain	321	375	1.5e-21	76.4	ORC2 WHD
`XP_057774320.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	3.2e-51	174.1	Origin recognition complex subunit 2 RecA-like domain
`XP_057774320.1`	Pfam	`PF24882`	WHD_ORC2	Domain	321	375	1.5e-21	76.4	ORC2 WHD
`XP_057774321.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	3.2e-51	174.1	Origin recognition complex subunit 2 RecA-like domain
`XP_057774321.1`	Pfam	`PF24882`	WHD_ORC2	Domain	321	375	1.5e-21	76.4	ORC2 WHD
`XP_057774322.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	2.8e-51	174.3	Origin recognition complex subunit 2 RecA-like domain
`XP_057774322.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.5e-22	78.9	ORC2 WHD
`XP_057774323.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	2.8e-51	174.3	Origin recognition complex subunit 2 RecA-like domain
`XP_057774323.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.5e-22	78.9	ORC2 WHD
`XP_057774324.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	2.8e-51	174.3	Origin recognition complex subunit 2 RecA-like domain
`XP_057774324.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.5e-22	78.9	ORC2 WHD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057918340.1
TTGTTTTGCCCTTTTTCTTTTTTGTGTCCTACATCTCTCCATTTTTCCTCTCTGCCTCCCTCGCACTCACTGGTTTTTAAAAAATCAAGACATCTCTCTGCCTTGCTCTCGTCGCCTCCCCTCCCTTCCTAAGATCTGGCGTTTCTTCGCCGTCGACCACCACCACGACTACCCTCATCTCTTTCGCACACGACCACCACCCCTTGCTCTCTCTCACTTCTCTCGGCCGTCCGGCGAGAAATCGCCATCACCGCCGCTGC...

XM_057918337.1
GTTTTGCCCTTTTTCTTTTTTGTGTCCTACATCTCTCCATTTTTCCTCTCTGCCTCCCTCGCACTCACTGGTTTTTAAAAAATCAAGACATCTCTCTGCCTTGCTCTCGTCGCCTCCCCTCCCTTCCTAAGATCTGGCGTTTCTTCGCCGTCGACCACCACCACGACTACCCTCATCTCTTTCGCACACGACCACCACCCCTTGCTCTCTCTCACTTCTCTCGGCCGTCCGGCGAGAAATCGCCATCACCGCCGCTGCCC...

CDS

6 records

下载 CDS FASTA

LOC130993449
ATGGAGCCAAATGACCCCGAGGAAGAGGAGTTCGGGTTCTCAAGAAACTACTTTTTAACAAAAGAATTGTGCAGTTCTGGCAAGAAATCAGCGTGCAAAGTTTCTGATATCAATCTCGTAGACGAGCAGGAATTAAGAGAAGCATATGCTAAACTTGAGTTCAAGCACGAGAAAGAGATCAATGCTCTTGTAGAAAGTTACAAGAAGTTGTATACTGAATGGGTTTTTATGTTAAGGTGTGGATTTGGGCTTCTGTTGTA...

Protein

6 records

下载 Protein FASTA

XP_057774319.1
MEPNDPEEEEFGFSRNYFLTKELCSSGKKSACKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLLYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKNQQPFHTQSMDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIFFPPILAHSGST...

XP_057774320.1
MEPNDPEEEEFGFSRNYFLTKELCSSGKKSACKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLLYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKNQQPFHTQSMDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIFFPPILAHSGST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器