Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002401`

染色体: Chr07 坐标: 22353657-22357269 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002401`
名称	SmilChr07G002401
描述	uncharacterized SmilChr07G002401
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	22353657 - 22357269 / `-`

ID 对照

NCBI Gene ID	`LOC130993481`
GeneID	`130993481`
locus_tag	`-`
NCBI Name	`LOC130993481`
原始查询	`SmilChr07G002401`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450]; symbol=AT5G23850; hit=AT5G23850; species=arabidopsis; confidence=high
产物	O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450]; symbol=AT5G23850; hit=AT5G23850; species=arabidopsis; confidence=high
Arabidopsis	`AT5G23850` (AT5G23850) O-glucosyltransferase rumi-like protein (DUF821) [Source:NCBI gene (formerly Entrezgene);Acc:832450] identity=60.4; qcov=0.967; evalue=0; confidence=high
Rice	`Os02g0642700` - identity=62.2; qcov=0.862; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF05686 (Glyco_transf_90)
InterPro	-
eggNOG	-
NR	GeneID:130993481

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057774364.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057774364.1`
3	Nucleus	细胞核	0.00000	`XP_057774364.1`
4	Chromosome	染色体	0.00000	`XP_057774364.1`
5	Centromere	着丝粒	0.00000	`XP_057774364.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:22354730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,B19
`Chr7:22355066`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:22355166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,D9
`Chr7:22355250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C77
`Chr7:22355383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:22355443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B59,B84,C29
`Chr7:22355538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B101,C32,C68
`Chr7:22356604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B28,B65,C12,C49
`Chr7:22356653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B59,B84,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774364.1

509 aa

254

509

Glyco_transf_90

PF05686 Glyco_transf_90 106-498 aa

XP_057774365.1

509 aa

254

509

Glyco_transf_90

PF05686 Glyco_transf_90 106-498 aa

XP_057774366.1

509 aa

254

509

Glyco_transf_90

PF05686 Glyco_transf_90 106-498 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774364.1`	Pfam	`PF05686`	Glyco_transf_90	Family	106	498	7e-188	625.2	Glycosyl transferase family 90
`XP_057774365.1`	Pfam	`PF05686`	Glyco_transf_90	Family	106	498	7e-188	625.2	Glycosyl transferase family 90
`XP_057774366.1`	Pfam	`PF05686`	Glyco_transf_90	Family	106	498	7e-188	625.2	Glycosyl transferase family 90

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918381.1
CAAATTCCCTTCCCCTTCTAGAGGGGAAAAAGAGAGAGAATTTAATTTAAATTGAGGAGTAAAACTGTATATGTAGTGAAAACATGAAACAGATTGGCAGGTTGCCTACTTTTGGCTCGTTTTAGGACTTCTCACTCACGAGAGAGCCTTGCTCTCACACTAAACTTATCTCTCTCTCTCTCTCTCCTCGTGCAATTTTTCTGACTTTTGCCCTTTCATCGTCTTCCTCACATAGCAGTTCAATCTCCATCTCAAAACCC...

XM_057918383.1
AGTGAAAACATGAAACAGATTGGCAGGTTGCCTACTTTTGGCTCGTTTTAGGACTTCTCACTCACGAGAGAGCCTTGCTCTCACACTAAACTTATCTCTCTCTCTCTCTCTCCTCGTGCAATTTTTCTGACTTTTGCCCTTTCATCGTCTTCCTCACATAGCAGTTCAATCTCCATCTCAAAACCCCTTCAACTCTTTTTCAGCTTAGCAGTCAAAGGTTTCATTACTAATAAATCATCTTCTTTTCCAGTTATTCTTCA...

CDS

3 records

下载 CDS FASTA

LOC130993481
ATGGAGGCGATCCGGCGGCCGTTGGCGAAATCGTCGCTGGTGGCGCTCTTCTTCGTCGTCCTCACTCTCGGCGCCTTCATTTGCACGCGCTATCTCGACTCCTCTGCCGCCTTGATGGATACAAATTCCCCTCAAAGACCAGTGTTTACACCGGAAGTAGTCGGTTCTGGTTCGACTCAAAATCTCCAGACTGCTCCCAAGCCCATAAACATCCCATTAAACTGTTCATTGGGTGAACGTTCTAGAACCTGCCCTGCCAA...

Protein

3 records

下载 Protein FASTA

XP_057774364.1
MEAIRRPLAKSSLVALFFVVLTLGAFICTRYLDSSAALMDTNSPQRPVFTPEVVGSGSTQNLQTAPKPINIPLNCSLGERSRTCPANYYPSQILAEAKHHSSSPPPSCPDYFRWIYDDLWPWRETGITREMVMSASRTANFRLVVVDGKAYVERYRKSFQSRDTFTLWGILQLLRRYPGKLPDLDLMFDCVDWPIIKKDTFRAPKYPAPPPLFRYCGNDSTLDIVFPDWSFWGWPEINIKPWEALSKDLKEGNTRTRWRD...

XP_057774365.1
MEAIRRPLAKSSLVALFFVVLTLGAFICTRYLDSSAALMDTNSPQRPVFTPEVVGSGSTQNLQTAPKPINIPLNCSLGERSRTCPANYYPSQILAEAKHHSSSPPPSCPDYFRWIYDDLWPWRETGITREMVMSASRTANFRLVVVDGKAYVERYRKSFQSRDTFTLWGILQLLRRYPGKLPDLDLMFDCVDWPIIKKDTFRAPKYPAPPPLFRYCGNDSTLDIVFPDWSFWGWPEINIKPWEALSKDLKEGNTRTRWRD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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