当前解析结果
SmilChr07G002403| 统一新 Gene ID | SmilChr07G002403 |
|---|---|
| 名称 | SmilChr07G002403 |
| 描述 | uncharacterized SmilChr07G002403 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 22385933 - 22387894 / + |
| NCBI Gene ID | LOC130993968 |
|---|---|
| GeneID | 130993968 |
| locus_tag | - |
| NCBI Name | LOC130993968 |
| 原始查询 | SmilChr07G002403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=26.3; qcov=0.809; evalue=1.07e-50; confidence=low |
| Rice | Os12g0597300- identity=27.8; qcov=0.741; evalue=3.53e-46; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993968 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774990.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057774990.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774990.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774990.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774990.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:22385999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr7:22386047 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B21 |
Chr7:22386047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr7:22386091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr7:22386330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr7:22386434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B55,C5,D8 |
Chr7:22386461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,B34,B45,C83 |
Chr7:22386543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr7:22386549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr7:22386567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr7:22386619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B15,B6,D5 |
Chr7:22386756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774990.1PF00872
Transposase_mut 336-436 aa
PF10551
MULE 337-431 aa
PF04434
SWIM 580-609 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774990.1 |
Pfam | PF00872 |
Transposase_mut | Family | 336 | 436 | 5.9e-11 | 42.6 | Transposase, Mutator family |
XP_057774990.1 |
Pfam | PF10551 |
MULE | Domain | 337 | 431 | 5.4e-21 | 75.5 | MULE transposase domain |
XP_057774990.1 |
Pfam | PF04434 |
SWIM | Domain | 580 | 609 | 5.3e-05 | 23.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。