Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002418`

染色体: Chr07 坐标: 22529445-22532854 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002418`
名称	SmilChr07G002418
描述	uncharacterized SmilChr07G002418
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	22529445 - 22532854 / `-`

ID 对照

NCBI Gene ID	`LOC130993501`
GeneID	`130993501`
locus_tag	`-`
NCBI Name	`LOC130993501`
原始查询	`SmilChr07G002418`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GTP-binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835297]; symbol=GB1; hit=AT5G52210; species=arabidopsis; confidence=high
产物	GTP-binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835297]; symbol=GB1; hit=AT5G52210; species=arabidopsis; confidence=high
Arabidopsis	`AT5G52210` (GB1) GTP-binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835297] identity=79.2; qcov=1; evalue=5.21e-117; confidence=high
Rice	`Os03g0392300` (OsGB1a) - identity=74.8; qcov=0.98; evalue=1.34e-107; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0033365 (protein localization to organelle); GO:0043001 (Golgi to plasma membrane protein transport)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130993501

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057774387.1`
2	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057774390.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057774387.1`
4	Vesicle	囊泡	1.00000	`XP_057774390.1`
5	Endosome	内体	1.00000	`XP_057774390.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:22529655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,C2
`Chr7:22529789`	`ATG`	`A`	2bp_deletion	frameshift_variant	5	A21,B115,B124,B20,C48
`Chr7:22529789`	`ATG`	`A`	2bp_deletion	CDS_variant	5	A21,B115,B124,B20,C48
`Chr7:22530736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774387.1

237 aa

118

237

Arf

MMR_HSR1

Roc

Ras

Gtr1_RagA

PF00025 Arf 11-170 aa PF01926 MMR_HSR1 20-134 aa PF08477 Roc 20-136 aa PF00071 Ras 20-145 aa PF04670 Gtr1_RagA 20-147 aa

XP_057774388.1

237 aa

118

237

Arf

MMR_HSR1

Roc

Ras

Gtr1_RagA

PF00025 Arf 11-170 aa PF01926 MMR_HSR1 20-134 aa PF08477 Roc 20-136 aa PF00071 Ras 20-145 aa PF04670 Gtr1_RagA 20-147 aa

XP_057774389.1

237 aa

118

237

Arf

MMR_HSR1

Roc

Ras

Gtr1_RagA

PF00025 Arf 11-170 aa PF01926 MMR_HSR1 20-134 aa PF08477 Roc 20-136 aa PF00071 Ras 20-145 aa PF04670 Gtr1_RagA 20-147 aa

XP_057774390.1

202 aa

101

202

Arf

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 11-183 aa PF01926 MMR_HSR1 20-134 aa PF08477 Roc 20-136 aa PF04670 Gtr1_RagA 20-140 aa PF00071 Ras 20-184 aa

XP_057774391.1

202 aa

101

202

Arf

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 11-183 aa PF01926 MMR_HSR1 20-134 aa PF08477 Roc 20-136 aa PF04670 Gtr1_RagA 20-140 aa PF00071 Ras 20-184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774387.1`	Pfam	`PF00025`	Arf	Domain	11	170	3.5e-45	154.3	ADP-ribosylation factor family
`XP_057774387.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	134	1.8e-05	25.5	50S ribosome-binding GTPase
`XP_057774387.1`	Pfam	`PF08477`	Roc	Domain	20	136	6.5e-10	40.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057774387.1`	Pfam	`PF00071`	Ras	Domain	20	145	3.2e-09	37.3	Ras family
`XP_057774387.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	147	2.8e-05	24.4	Gtr1/RagA G protein conserved region
`XP_057774388.1`	Pfam	`PF00025`	Arf	Domain	11	170	3.5e-45	154.3	ADP-ribosylation factor family
`XP_057774388.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	134	1.8e-05	25.5	50S ribosome-binding GTPase
`XP_057774388.1`	Pfam	`PF08477`	Roc	Domain	20	136	6.5e-10	40.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057774388.1`	Pfam	`PF00071`	Ras	Domain	20	145	3.2e-09	37.3	Ras family
`XP_057774388.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	147	2.8e-05	24.4	Gtr1/RagA G protein conserved region
`XP_057774389.1`	Pfam	`PF00025`	Arf	Domain	11	170	3.5e-45	154.3	ADP-ribosylation factor family
`XP_057774389.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	134	1.8e-05	25.5	50S ribosome-binding GTPase
`XP_057774389.1`	Pfam	`PF08477`	Roc	Domain	20	136	6.5e-10	40.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057774389.1`	Pfam	`PF00071`	Ras	Domain	20	145	3.2e-09	37.3	Ras family
`XP_057774389.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	147	2.8e-05	24.4	Gtr1/RagA G protein conserved region
`XP_057774390.1`	Pfam	`PF00025`	Arf	Domain	11	183	2.2e-49	168.0	ADP-ribosylation factor family
`XP_057774390.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	134	1.3e-05	26.0	50S ribosome-binding GTPase
`XP_057774390.1`	Pfam	`PF08477`	Roc	Domain	20	136	4.8e-10	40.4	Ras of Complex, Roc, domain of DAPkinase
`XP_057774390.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	140	2.9e-05	24.3	Gtr1/RagA G protein conserved region
`XP_057774390.1`	Pfam	`PF00071`	Ras	Domain	20	184	8.5e-11	42.4	Ras family
`XP_057774391.1`	Pfam	`PF00025`	Arf	Domain	11	183	2.2e-49	168.0	ADP-ribosylation factor family
`XP_057774391.1`	Pfam	`PF01926`	MMR_HSR1	Family	20	134	1.3e-05	26.0	50S ribosome-binding GTPase
`XP_057774391.1`	Pfam	`PF08477`	Roc	Domain	20	136	4.8e-10	40.4	Ras of Complex, Roc, domain of DAPkinase
`XP_057774391.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	140	2.9e-05	24.3	Gtr1/RagA G protein conserved region
`XP_057774391.1`	Pfam	`PF00071`	Ras	Domain	20	184	8.5e-11	42.4	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057918406.1
ATACAATAGAATAAAGTGTACGCCTAGCCGAGGTTGGGGCGTAAGTTGTAACGTTGTCTAGACTCAATCTGGGTGCTGTTGTACCATCGCCATAGTCGAAACACAAATCTCCACTTGTTGAAGCCTAAATCACCAAGCAGATTTGGGAGCTCTTCAATTCAATTCATTCTTTTACAATTAACAAACGAAGGGACCTTTTTATTCTTTTTGTTGCAGTCTGTACAGTAGCAAGATATTGAATTCCTAGTTATTTCCATAGA...

XM_057918405.1
ATACAATAGAATAAAGTGTACGCCTAGCCGAGGTTGGGGCGTAAGTTGTAACGTTGTCTAGACTCAATCTGGGTGCTGTTGTACCATCGCCATAGTCGAAACACAAATCTCCACTTGTTGAAGCCTAAATCACCAAGCAGATTTGGGAGCTCTTCAATTCAATTCATTCTTTTACAATTAACAAACGAAGAATTTTAGGAGATCAAAGCCGATGCAAGTTACATAGGATATAGCATGTTTGAGGTGTACTCTTTTCAGCT...

CDS

5 records

下载 CDS FASTA

LOC130993501
ATGTTTTCATTGTTTTATGGACTCTGGAAGTACATGTTCACCAAGATGGAGTTTCATGTTCTCATTCTTGGAATTGACAAAGCTGGCAAAACAACATTACTAGAGAAAGTGAAGTCACAGTATTCAAACTTGGAAGGCCTTCCACCTGACCGAATTGTTCCAACTGTGGGACTCAATATTGGTCGTGTTGAAGTTTTAAACACAAAACTCGTATTCTGGGACCTGGGAGGTCAGCCTGGTCTTCGCTCCATTTGGGAAAA...

Protein

5 records

下载 Protein FASTA

XP_057774387.1
MFSLFYGLWKYMFTKMEFHVLILGIDKAGKTTLLEKVKSQYSNLEGLPPDRIVPTVGLNIGRVEVLNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDSKSALEKALRHEDLQGAPLLILANKQDLEDAVPADELARYLDLKKLNERVYAFQAVSATDGYTHSFVYSYTYLVGKQSKGAESVQTHMTISGFDCRLGIKESVNWLVDAMERSKRTDTLRVRAGSSVV

XP_057774388.1
MFSLFYGLWKYMFTKMEFHVLILGIDKAGKTTLLEKVKSQYSNLEGLPPDRIVPTVGLNIGRVEVLNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDSKSALEKALRHEDLQGAPLLILANKQDLEDAVPADELARYLDLKKLNERVYAFQAVSATDGYTHSFVYSYTYLVGKQSKGAESVQTHMTISGFDCRLGIKESVNWLVDAMERSKRTDTLRVRAGSSVV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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