Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002419

染色体: Chr07 坐标: 22534351-22538300 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002419
名称SmilChr07G002419
描述protein phosphatase inhibitor 2
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向22534351 - 22538300 / +

ID 对照

NCBI Gene IDLOC130993504
GeneID130993504
locus_tag-
NCBI NameLOC130993504
原始查询SmilChr07G002419

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein phosphatase inhibitor 2
产物protein phosphatase inhibitor 2
ArabidopsisAT5G52200 (I-2)
phosphoprotein phosphatase inhibitor [Source:NCBI gene (formerly Entrezgene);Acc:835296]
identity=47.5; qcov=0.856; evalue=3.07e-25; confidence=medium
RiceOs05g0301600
-
identity=61.9; qcov=0.869; evalue=5.29e-51; confidence=high
GOGO:0004864 (protein phosphatase inhibitor activity); GO:0009966 (regulation of signal transduction); GO:0043666 (GO:0043666)
KEGG-
PfamPF04979 (IPP-2)
InterPro-
eggNOG-
NRGeneID:130993504

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057774393.1
2 Cytosol 细胞质基质 1.00000 XP_057774393.1
3 Nucleus 细胞核 0.80000 XP_057774394.1
4 Chromosome 染色体 0.00000 XP_057774393.1
5 Centromere 着丝粒 0.00000 XP_057774393.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057774393.1
163 aa
N
1
82
163
IPP-2
C
PF04979 IPP-2 4-139 aa
XP_057774394.1
160 aa
N
1
80
160
IPP-2
C
PF04979 IPP-2 4-136 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774393.1 Pfam PF04979 IPP-2 Family 4 139 1.2e-24 88.2 Protein phosphatase inhibitor 2 (IPP-2)
XP_057774394.1 Pfam PF04979 IPP-2 Family 4 136 2.8e-25 90.2 Protein phosphatase inhibitor 2 (IPP-2)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057918410.1
GGTGCATTTGTCATTTCGTAGGCAGCAGATAAATTCCGGATTCCTGATCCTGAACGCCAAAACGAAGAGGAGAGAGAGAGAGAGGCTCACAATTTTGTTTCCGTTTCGCAGCGAAGCATTGGAAATAACCCGAAAGGAAATCCATCGTATCATCAAATGTCACGAGTGAAATGGAATGAAGATAATTTAGCAGAAATTGAGGCAAATAAACCTGTAAGGCAGAAAATAACCGAACCAAAGACACCGTACCATCCCATGAT...
XM_057918411.1
GGTGCATTTGTCATTTCGTAGGCAGCAGATAAATTCCGGATTCCTGATCCTGAACGCCAAAACGAAGAGGAGAGAGAGAGAGAGGCTCACAATTTTGTTTCCGTTTCGCAGCGAAGCATTGGAAATAACCCGAAAGGAAATCCATCGTATCATCAAATGTCACGAGTGAAATGGAATGAAGATAATTTAGCAGAAATTGAGGCAAATAAACCTGTAAGGCAGAAAATAACCGAACCAAAGACACCGTACCATCCCATGAT...

CDS

2 records

下载 CDS FASTA
LOC130993504
ATGTCACGAGTGAAATGGAATGAAGATAATTTAGCAGAAATTGAGGCAAATAAACCTGTAAGGCAGAAAATAACCGAACCAAAGACACCGTACCATCCCATGATTGATGATGAAGATGATGGTGATTCATCATCTCCTTCGAGAAGAGGAGGTTTTGGGGATTATTTTGAAGATGCAATGAATATACTAGCGACATCTTCTTCATTGAATGATGTAGGCTCCTCTAGTAAAACTGGCTCACATCACTCAGGCTGGACATC...
LOC130993504
ATGTCACGAGTGAAATGGAATGAAGATAATTTAGCAGAAATTGAGGCAAATAAACCTGTAAGGCAGAAAATAACCGAACCAAAGACACCGTACCATCCCATGATTGATGATGAAGATGATGGTGATTCATCATCTCCTTCGAGAAGAGGAGGTTTTGGGGATTATTTTGAAGATGCAATGAATATACTAGCGACATCTTCTTCATTGAATGATGTAGGCTCCTCTAGTAAAACTGGCTCACATCACTCAGGCTGGACATC...

Protein

2 records

下载 Protein FASTA
XP_057774393.1
MSRVKWNEDNLAEIEANKPVRQKITEPKTPYHPMIDDEDDGDSSSPSRRGGFGDYFEDAMNILATSSSLNDVGSSSKTGSHHSGWTSSDDDTDAMDQGEEDSDSERRRSFKEHRKDHYDEFLKIKELRRNGSQLEDESDDESSITAGVKDIDIKESSRPANGS
XP_057774394.1
MSRVKWNEDNLAEIEANKPVRQKITEPKTPYHPMIDDEDDGDSSSPSRRGGFGDYFEDAMNILATSSSLNDVGSSSKTGSHHSGWTSSDDDTDAMDQDSDSERRRSFKEHRKDHYDEFLKIKELRRNGSQLEDESDDESSITAGVKDIDIKESSRPANGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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