当前解析结果
SmilChr07G002422| 统一新 Gene ID | SmilChr07G002422 |
|---|---|
| 名称 | SmilChr07G002422 |
| 描述 | uncharacterized SmilChr07G002422 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 22561726 - 22563443 / + |
| NCBI Gene ID | LOC130993505 |
|---|---|
| GeneID | 130993505 |
| locus_tag | - |
| NCBI Name | LOC130993505 |
| 原始查询 | SmilChr07G002422 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane protein 161AB protein [Source:NCBI gene (formerly Entrezgene);Acc:835294]; symbol=AT5G52180; hit=AT5G52180; species=arabidopsis; confidence=high |
| 产物 | transmembrane protein 161AB protein [Source:NCBI gene (formerly Entrezgene);Acc:835294]; symbol=AT5G52180; hit=AT5G52180; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G52180 (AT5G52180)transmembrane protein 161AB protein [Source:NCBI gene (formerly Entrezgene);Acc:835294] identity=46.2; qcov=1.01; evalue=2.39e-133; confidence=high |
| Rice | Os06g0129000 (P0538C01.11)- identity=33; qcov=0.484; evalue=3.31e-26; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF10268 (Tmemb_161AB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993505 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057774395.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057774395.1 |
| 3 | Nucleus membrane | 核膜 | 0.40000 | XP_057774395.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774395.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:22561989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:22562275 |
CT |
C |
1bp_deletion | frameshift_variant | 115 | A16,A19,A2,A20,A23,A24,A5,A6,A7,B100,B102,B104,B106,B107,B11,B113,B117,B118,B119,B12,B120,B121,B126,B128,B130,B14,B140,B15,B17,B18,B2,B20,B24,B27,B30,B33,B34,B35,B36,B37,B38,B39,B41,B42,B43,B46,B48,B5,B53,B58,B59,B6,B61,B62,B63,B65,B69,B7,B70,B71,B73,B75,B81,B82,B83,B84,B85,B86,B93,B99,C11,C13,C15,C16,C17,C18,C19,C21,C3,C30,C31,C34,C35,C38,C4,C40,C41,C5,C50,C53,C54,C55,C56,C57,C58,C60,C62,C63,C65,C67,C69,C72,C74,C75,C76,C77,C81,C86,D1,D11,D2,D3,D5,D6,D7 |
Chr7:22562279 |
T |
TC |
1bp_insertion | frameshift_variant | 119 | A16,A18,A19,A2,A20,A23,A24,A5,A6,A7,B100,B102,B104,B106,B107,B11,B113,B117,B118,B119,B12,B120,B121,B126,B128,B130,B14,B140,B15,B17,B18,B2,B20,B24,B27,B30,B33,B34,B35,B36,B37,B38,B39,B41,B42,B43,B46,B48,B5,B53,B58,B59,B6,B61,B62,B63,B65,B69,B7,B70,B71,B73,B75,B8,B81,B82,B83,B84,B85,B86,B93,B99,C11,C13,C15,C16,C17,C18,C19,C21,C3,C30,C31,C34,C35,C38,C4,C40,C41,C45,C47,C5,C50,C53,C54,C55,C56,C57,C58,C60,C62,C63,C65,C67,C69,C72,C74,C75,C76,C77,C81,C86,D1,D11,D2,D3,D5,D6,D7 |
Chr7:22562298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:22562478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:22562508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B115,B20,C48 |
Chr7:22562684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:22562723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr7:22562980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:22562997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B115,B124,B20,C48 |
Chr7:22563007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:22563168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B19,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774395.1PF10268
Tmemb_161AB 217-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774395.1 |
Pfam | PF10268 |
Tmemb_161AB | Family | 217 | 396 | 2.4e-11 | 43.8 | Predicted transmembrane protein 161AB |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。