Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002425`

染色体: Chr07 坐标: 22577308-22582129 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002425`
名称	SmilChr07G002425
描述	E3 ubiquitin-protein ligase XBAT33-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	22577308 - 22582129 / `-`

ID 对照

NCBI Gene ID	`LOC130993507`
GeneID	`130993507`
locus_tag	`-`
NCBI Name	`LOC130993507`
原始查询	`SmilChr07G002425`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase XBAT33-like
产物	E3 ubiquitin-protein ligase XBAT33-like
Arabidopsis	`AT5G07270` (XBAT33) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:830618] identity=74.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0791200` (XBOS32) - identity=54.8; qcov=0.875; evalue=2.06e-154; confidence=high
GO	GO:0005515 (protein binding); GO:0009707 (chloroplast outer membrane); GO:0030941 (chloroplast targeting sequence receptor activity); GO:0045036 (protein targeting to chloroplast)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF24921 (RING_XB3-XBAT31)
InterPro	-
eggNOG	-
NR	GeneID:130993507

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057774397.1`
2	Cytoplasm	细胞质	0.80000	`XP_057774397.1`
3	Nucleus	细胞核	0.00000	`XP_057774397.1`
4	Chromosome	染色体	0.00000	`XP_057774397.1`
5	Centromere	着丝粒	0.00000	`XP_057774397.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:22577670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:22577737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,A7,B94,C80
`Chr7:22577836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,C72,D1
`Chr7:22577842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B64,C19,C31
`Chr7:22577892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C78
`Chr7:22578009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C61,C67
`Chr7:22579150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B59,B84,C29
`Chr7:22579182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr7:22579379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B51,B85,C27,C44
`Chr7:22580536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B108,B12,B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774397.1

511 aa

256

511

Ank_2

Ank_3

Ank

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_2

Ank

Ank_2

Ank_5

Ank_3

Ank

Ank_2

Ank

RING_XB3-XBAT31

PF12796 Ank_2 14-75 aa PF13606 Ank_3 46-72 aa PF00023 Ank 46-75 aa PF13637 Ank_4 49-98 aa PF12796 Ank_2 49-132 aa PF13857 Ank_5 64-106 aa PF13606 Ank_3 77-104 aa PF00023 Ank 78-108 aa PF12796 Ank_2 111-199 aa PF00023 Ank 112-131 aa PF12796 Ank_2 163-241 aa PF13857 Ank_5 172-213 aa PF13606 Ank_3 174-200 aa PF00023 Ank 174-203 aa PF12796 Ank_2 216-264 aa PF00023 Ank 217-243 aa PF24921 RING_XB3-XBAT31 314-368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774397.1`	Pfam	`PF12796`	Ank_2	Repeat	14	75	2.7e-49	166.4	Ankyrin repeats (3 copies)
`XP_057774397.1`	Pfam	`PF13606`	Ank_3	Repeat	46	72	4.6e-26	88.4	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF00023`	Ank	Repeat	46	75	4.7e-36	121.5	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF13637`	Ank_4	Repeat	49	98	4.2e-29	100.7	Ankyrin repeats (many copies)
`XP_057774397.1`	Pfam	`PF12796`	Ank_2	Repeat	49	132	2.7e-49	166.4	Ankyrin repeats (3 copies)
`XP_057774397.1`	Pfam	`PF13857`	Ank_5	Repeat	64	106	2.4e-28	98.6	Ankyrin repeats (many copies)
`XP_057774397.1`	Pfam	`PF13606`	Ank_3	Repeat	77	104	4.6e-26	88.4	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF00023`	Ank	Repeat	78	108	4.7e-36	121.5	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF12796`	Ank_2	Repeat	111	199	2.7e-49	166.4	Ankyrin repeats (3 copies)
`XP_057774397.1`	Pfam	`PF00023`	Ank	Repeat	112	131	4.7e-36	121.5	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF12796`	Ank_2	Repeat	163	241	2.7e-49	166.4	Ankyrin repeats (3 copies)
`XP_057774397.1`	Pfam	`PF13857`	Ank_5	Repeat	172	213	2.4e-28	98.6	Ankyrin repeats (many copies)
`XP_057774397.1`	Pfam	`PF13606`	Ank_3	Repeat	174	200	4.6e-26	88.4	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF00023`	Ank	Repeat	174	203	4.7e-36	121.5	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF12796`	Ank_2	Repeat	216	264	2.7e-49	166.4	Ankyrin repeats (3 copies)
`XP_057774397.1`	Pfam	`PF00023`	Ank	Repeat	217	243	4.7e-36	121.5	Ankyrin repeat
`XP_057774397.1`	Pfam	`PF24921`	RING_XB3-XBAT31	Domain	314	368	3.8e-18	66.0	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918414.1
TTCTAAAGTTAAAAGCATAAAAAAGGAAGAAGAAAAAGAAAAAAAAAGTTTTTCTCTCTTTTCAGTTCCCATGGCGAAGAGGAATCCCAATTAATTCCTCCCACCACCATTGGAGCAAAATTTTTACTTGTTAATTTTGGACACAGCTTTTCCCTTTTCAAAATTAATGTCTTAGTATGAAGAGAGTGGGCGATGTTGATGGTTTATCCACTCTGGTAATGCAAAATGAAGGACCCCAAAAAGCAAAGGACAAAACCATC...

CDS

1 records

下载 CDS FASTA

LOC130993507
ATGGGGAATTCGTTTGGCTGCTCAGCTTCAGGAGAAAGATTGGTGTCCGCCGCGCGAGATGGGGATTTTGTTGAGGCAAAGATGCTTTTGGATTGCAATCCATGCCTTGCAAAGTACTCAACTTTCGGAGGCTTGAACTCTCCTCTTCATTTCGCTGCCGCCAAGGGCCACAATGAGATTGTGGCATTGTTACTGGAGAATGGGGCTGATGTGAATTCAAGGAATTATTGTGGACAGACAGCTCTAATGCAAGCGTGTCG...

Protein

1 records

下载 Protein FASTA

XP_057774397.1
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFASVNGHVRCMRLVVSDFVPSAPFELLNAQIVSDGSDGSNNKTSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANASAVTFHYGTSMDLIGAGSTPLHYAACGGNVKCCQILLAQGASRLSLNCNGWLPIDVARMW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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