Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002450`

染色体: Chr07 坐标: 23037417-23039879 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002450`
名称	SmilChr07G002450
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	23037417 - 23039879 / `+`

ID 对照

NCBI Gene ID	`LOC130993980`
GeneID	`130993980`
locus_tag	`-`
NCBI Name	`LOC130993980`
原始查询	`SmilChr07G002450`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
产物	zinc finger BED domain-containing protein RICESLEEPER 2-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=30.1; qcov=0.912; evalue=2.09e-93; confidence=low
Rice	`Os03g0733400` - identity=33.2; qcov=1.01; evalue=1.18e-121; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130993980

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775002.1`
2	Chromosome	染色体	0.00000	`XP_057775002.1`
3	Centromere	着丝粒	0.00000	`XP_057775002.1`
4	Chromatin	染色质	0.00000	`XP_057775002.1`
5	Telomere	端粒	0.00000	`XP_057775002.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:23037496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B112,B79,C41
`Chr7:23037506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,C16,C61,C72
`Chr7:23037507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A21,B103,B28,D9
`Chr7:23037565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:23037579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,B68,B80
`Chr7:23037597`	`G`	`GA`	1bp_insertion	frameshift_variant	2	A21,B28
`Chr7:23037597`	`G`	`GA`	1bp_insertion	CDS_variant	2	A21,B28
`Chr7:23037622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B73,C38
`Chr7:23037698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,B14,B85
`Chr7:23037699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B48
`Chr7:23037794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,C8,C81
`Chr7:23037868`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B23,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775002.1

704 aa

352

704

ZBED1_RNase-like

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27041 ZBED1_RNase-like 214-311 aa PF27039 ZBED1_RNase-like_helical 314-421 aa PF14372 hAT-like_RNase-H 443-535 aa PF05699 Dimer_Tnp_hAT 589-678 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775002.1`	Pfam	`PF27041`	ZBED1_RNase-like	Domain	214	311	1.3e-28	99.7	ZBED1 RNase-like domain
`XP_057775002.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	314	421	6.5e-29	100.9	ZBED1 RNase-like helical domain
`XP_057775002.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	443	535	2.4e-26	92.5	hAT-like transposase, RNase-H fold
`XP_057775002.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	589	678	1.5e-24	86.3	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919019.1
TGAGACAATGGAGAAAGAGAATGAGGTGGAGAAAGAAGTGGTCGATGTAAATGATGATAAAGATGATAATATAATAGAAGGGGATGATGGGGAGAAAGATAAACAAGAAGGTATTGATGGAGAAGATGATAAAGATGGAGACAAGGAGGAGGAGAATAATGTGTTTGATAAGAAGAAAAGGAAAAAATGTTCCAAAGCTTATGATGATTTCATTGAACTGACAGCAGATGATGGGACTACAAAGTTTCAATGCATACATT...

CDS

1 records

下载 CDS FASTA

LOC130993980
ATGGAGAAAGAGAATGAGGTGGAGAAAGAAGTGGTCGATGTAAATGATGATAAAGATGATAATATAATAGAAGGGGATGATGGGGAGAAAGATAAACAAGAAGGTATTGATGGAGAAGATGATAAAGATGGAGACAAGGAGGAGGAGAATAATGTGTTTGATAAGAAGAAAAGGAAAAAATGTTCCAAAGCTTATGATGATTTCATTGAACTGACAGCAGATGATGGGACTACAAAGTTTCAATGCATACATTGCAAGAC...

Protein

1 records

下载 Protein FASTA

XP_057775002.1
MEKENEVEKEVVDVNDDKDDNIIEGDDGEKDKQEGIDGEDDKDGDKEEENNVFDKKKRKKCSKAYDDFIELTADDGTTKFQCIHCKTFLAKTSTGTTSHLWNHLKRCLQKKLHLKKQKTLQFQPVKSKFEMNPLSDGRYDHMKQREAVAHWILMGEQPFNAVESDGFHFMMSINQPRFQKISRATAKKDVINVYNIEKKKLQLELKDINKISLTTDIWKSKVQKISYMCVTGHFVDSQWQLQKRLLSFIPLPPPHGGVDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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