Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002458`

染色体: Chr07 坐标: 23102781-23105894 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002458`
名称	SmilChr07G002458
描述	uncharacterized SmilChr07G002458
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	23102781 - 23105894 / `-`

ID 对照

NCBI Gene ID	`LOC130993535`
GeneID	`130993535`
locus_tag	`-`
NCBI Name	`LOC130993535`
原始查询	`SmilChr07G002458`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835263]; symbol=AT5G51880; hit=AT5G51880; species=arabidopsis; confidence=high
产物	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835263]; symbol=AT5G51880; hit=AT5G51880; species=arabidopsis; confidence=high
Arabidopsis	`AT5G51880` (AT5G51880) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835263] identity=68.8; qcov=1; evalue=1.99e-93; confidence=high
Rice	`Os03g0119000` - identity=66.7; qcov=1; evalue=1.05e-90; confidence=high
GO	GO:0004656 (procollagen-proline 4-dioxygenase activity); GO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0018401 (peptidyl-proline hydroxylation to 4-hydroxy-L-proline); GO:0031418 (L-ascorbic acid binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130993535

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774442.1`
2	Cytosol	细胞质基质	0.80000	`XP_057774443.1`
3	Cytoplasm	细胞质	0.60000	`XP_057774443.1`
4	Nucleoplasm	核质	0.20000	`XP_057774442.1`
5	Chromosome	染色体	0.00000	`XP_057774442.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:23102960`	`A`	`AG`	1bp_insertion	frameshift_variant	4	B56,B7,C2,D8
`Chr7:23102960`	`A`	`AG`	1bp_insertion	CDS_variant	4	B56,B7,C2,D8
`Chr7:23102962`	`GC`	`G`	1bp_deletion	frameshift_variant	3	B7,C2,D8
`Chr7:23102962`	`GC`	`G`	1bp_deletion	CDS_variant	3	B7,C2,D8
`Chr7:23104388`	`A`	`AC`	1bp_insertion	frameshift_variant	5	B108,B119,B122,B132,B81
`Chr7:23104388`	`A`	`AC`	1bp_insertion	CDS_variant	5	B108,B119,B122,B132,B81
`Chr7:23104477`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B113,B34,B36,B45
`Chr7:23104477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B34,B36,B45
`Chr7:23104793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,B47
`Chr7:23104966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918459.1
ACCGAATCCATTCCCGGCCCATCAATCCTCCTCCATAGCCATAGTTGGAAGCATCTCCAGAGCTGCAGAAAATGAAGAGAAAAATGGGAGACCGGAAAAGAACAGCCATGGCAAACAAGAAATCAAAATCCGATTGGCCATGCATAAAACCCAAGTCTAATTTGAAGATCACTCGTCTCAAAGACGATGATCTGATTACTATCCAAAATTATCTCACGTCTGCCGAGTCAAAAGCATTTAGAGATGCTGCAGAGTCAATT...

XM_057918460.1
GGCAAACAAGAAATCAAAATCCGATTGGCCATGCATAAAACCCAAGTCTAATTTGAAGATCACTCGTCTCAAAGACGATGATCTGATTACTGTGAGTTACACCCTTTTTCATTTATCATTTTATGTGTGTGGAGAAATTGCGTTGCTCAAGATTGGATTTTACTCCCCCTCTTTGGAAGATTTGACTGTTGTTGGTTTTAATGATTGAATCCGTTAATCGTTTGAAATAATAAATGTTTCAGATCCAAAATTATCTCACG...

CDS

2 records

下载 CDS FASTA

LOC130993535
ATGAAGAGAAAAATGGGAGACCGGAAAAGAACAGCCATGGCAAACAAGAAATCAAAATCCGATTGGCCATGCATAAAACCCAAGTCTAATTTGAAGATCACTCGTCTCAAAGACGATGATCTGATTACTATCCAAAATTATCTCACGTCTGCCGAGTCAAAAGCATTTAGAGATGCTGCAGAGTCAATTGGTTTCGTTCACCAAGGTAGTCTTGGTCCAACAATGGGAGAGGCTTATAGAGACAATGATCGGATAGCTGT...

LOC130993535
ATGTTTCAGATCCAAAATTATCTCACGTCTGCCGAGTCAAAAGCATTTAGAGATGCTGCAGAGTCAATTGGTTTCGTTCACCAAGGTAGTCTTGGTCCAACAATGGGAGAGGCTTATAGAGACAATGATCGGATAGCTGTTGATGATCCTGCTCTTGCAGAAGCAATATGGGGTGCTGGACTTAACAAGTTCTTTTCAGATTTCAAGATTCGAGGAAAAGTTGCAGTTGGGTTGAATCCAAATATAAGGTTTTACCGGTA...

Protein

2 records

下载 Protein FASTA

XP_057774442.1
MKRKMGDRKRTAMANKKSKSDWPCIKPKSNLKITRLKDDDLITIQNYLTSAESKAFRDAAESIGFVHQGSLGPTMGEAYRDNDRIAVDDPALAEAIWGAGLNKFFSDFKIRGKVAVGLNPNIRFYRYSAGQRFGRHIDESVNLGEGRRTYYTLLIYLSGAPGKSKAKSKNDSSSQDSLDPLIGGETVFYGPRNALVAEVAPTEGMALLHVHGDKCMLHEARNVSKGIKYILRSDVAFA

XP_057774443.1
MFQIQNYLTSAESKAFRDAAESIGFVHQGSLGPTMGEAYRDNDRIAVDDPALAEAIWGAGLNKFFSDFKIRGKVAVGLNPNIRFYRYSAGQRFGRHIDESVNLGEGRRTYYTLLIYLSGAPGKSKAKSKNDSSSQDSLDPLIGGETVFYGPRNALVAEVAPTEGMALLHVHGDKCMLHEARNVSKGIKYILRSDVAFA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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