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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002466

染色体: Chr07 坐标: 23193190-23199935 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002466
名称SmilChr07G002466
描述phosphoglucomutase, chloroplastic
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向23193190 - 23199935 / +

ID 对照

NCBI Gene IDLOC130993542
GeneID130993542
locus_tag-
NCBI NameLOC130993542
原始查询SmilChr07G002466

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phosphoglucomutase, chloroplastic
产物phosphoglucomutase%2C chloroplastic
ArabidopsisAT5G51820 (PGM)
phosphoglucomutase [Source:NCBI gene (formerly Entrezgene);Acc:835257]
identity=80.5; qcov=0.966; evalue=0; confidence=high
RiceOs10g0189100 (OspPGM)
-
identity=84.5; qcov=0.878; evalue=0; confidence=high
GOGO:0000287 (magnesium ion binding); GO:0004614 (phosphoglucomutase activity); GO:0005829 (cytosol); GO:0005975 (carbohydrate metabolic process)
KEGGsmil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
PfamPF02878 (PGM_PMM_I); PF02879 (PGM_PMM_II); PF02880 (PGM_PMM_III); PF24947 (PGM1_C_vert_fung)
InterPro-
eggNOG-
NRGeneID:130993542

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057774450.1
2 Cytoplasm 细胞质 0.60000 XP_057774450.1
3 Nucleus 细胞核 0.00000 XP_057774450.1
4 Chromosome 染色体 0.00000 XP_057774450.1
5 Centromere 着丝粒 0.00000 XP_057774450.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:23195764 C T EMS_canonical_SNV CDS_variant 1 B42
Chr7:23197171 G A EMS_canonical_SNV CDS_variant 4 B112,B7,C79,D8
Chr7:23197516 G A EMS_canonical_SNV CDS_variant 1 C39
Chr7:23197751 C T EMS_canonical_SNV CDS_variant 1 B13
Chr7:23197894 C T EMS_canonical_SNV CDS_variant 1 C65
Chr7:23197943 C T EMS_canonical_SNV CDS_variant 4 C15,C21,C83,D6
Chr7:23198221 G A EMS_canonical_SNV CDS_variant 5 B100,B41,B84,C37,D4
Chr7:23199080 G A EMS_canonical_SNV CDS_variant 2 A11,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774450.1
638 aa
N
1
319
638
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
PGM1_C_vert_fung
C
PF02878 PGM_PMM_I 95-234 aa PF02879 PGM_PMM_II 267-370 aa PF02880 PGM_PMM_III 379-498 aa PF24947 PGM1_C_vert_fung 503-635 aa
XP_057774451.1
638 aa
N
1
319
638
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
PGM1_C_vert_fung
C
PF02878 PGM_PMM_I 95-234 aa PF02879 PGM_PMM_II 267-370 aa PF02880 PGM_PMM_III 379-498 aa PF24947 PGM1_C_vert_fung 503-635 aa
XP_057774452.1
638 aa
N
1
319
638
PGM_PMM_I
PGM_PMM_II
PGM_PMM_III
PGM1_C_vert_fung
C
PF02878 PGM_PMM_I 95-234 aa PF02879 PGM_PMM_II 267-370 aa PF02880 PGM_PMM_III 379-498 aa PF24947 PGM1_C_vert_fung 503-635 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774450.1 Pfam PF02878 PGM_PMM_I Domain 95 234 1.5e-34 119.4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057774450.1 Pfam PF02879 PGM_PMM_II Domain 267 370 1.3e-11 45.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057774450.1 Pfam PF02880 PGM_PMM_III Domain 379 498 1.6e-22 80.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057774450.1 Pfam PF24947 PGM1_C_vert_fung Domain 503 635 1.5e-48 165.4 Phosphoglucomutase-1, C-terminal domain
XP_057774451.1 Pfam PF02878 PGM_PMM_I Domain 95 234 1.5e-34 119.4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057774451.1 Pfam PF02879 PGM_PMM_II Domain 267 370 1.3e-11 45.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057774451.1 Pfam PF02880 PGM_PMM_III Domain 379 498 1.6e-22 80.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057774451.1 Pfam PF24947 PGM1_C_vert_fung Domain 503 635 1.5e-48 165.4 Phosphoglucomutase-1, C-terminal domain
XP_057774452.1 Pfam PF02878 PGM_PMM_I Domain 95 234 1.5e-34 119.4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
XP_057774452.1 Pfam PF02879 PGM_PMM_II Domain 267 370 1.3e-11 45.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
XP_057774452.1 Pfam PF02880 PGM_PMM_III Domain 379 498 1.6e-22 80.5 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
XP_057774452.1 Pfam PF24947 PGM1_C_vert_fung Domain 503 635 1.5e-48 165.4 Phosphoglucomutase-1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057918467.1
TGAGACGAAAACCACATAGTTCATGTGGCAGACCCTCAATAGCTCTCTAGATTTGCGAACCACATTGACTCCCTCTCCCCAATTTTCCTCTTCTTAAAAACCTCTAATTTTCAATCACCTTACTCCACTCCACCACCCTACACATCTTTCTCTCCTACATTTCACGGGAACAACACAAAAAGAATAAGTGCGCAAACTTCTGAACAAGTTTATTTCTTTTTACGCATCAGCCATGGCTTTGAACTCCATAGCTTCAAGGC...
XM_057918468.1
AGACCCTCAATAGCTCTCTAGATTTGCGAACCACATTGACTCCCTCTCCCCAATTTTCCTCTTCTTAAAAACCTCTAATTTTCAATCACCTTACTCCACTCCACCACCCTACACATCTTTCTCTCCTACATTTCACGGGAACAACACAAAAAGAATAAGTGCGCAAACTTCTGAACAAGTTTATTTCTTTTTACGCATCAGCCATGGCTTTGAACTCCATAGCTTCAAGGCCCTCCTCCTCTTTGTTATCAAGAAAATTG...

CDS

3 records

下载 CDS FASTA
LOC130993542
ATGGCTTTGAACTCCATAGCTTCAAGGCCCTCCTCCTCTTTGTTATCAAGAAAATTGAGGAATTCTTCTGCAAATGATTCGGTTGTAGCCCATTCAGCTAGATTTCTCTGTTTCTTCAATCCCATTCCTCTTTTCTCCAACCTCTCTTTCAAGAATGCTTCACCATCACCAGTTTTGTCTGTCTCGGTTAAGGCGTCCTCTTCATCAACTTCTCCTTCCGCAACTGTCGCTCACTCCCAAGAACTCAAGATTAAGAGTGT...
LOC130993542
ATGGCTTTGAACTCCATAGCTTCAAGGCCCTCCTCCTCTTTGTTATCAAGAAAATTGAGGAATTCTTCTGCAAATGATTCGGTTGTAGCCCATTCAGCTAGATTTCTCTGTTTCTTCAATCCCATTCCTCTTTTCTCCAACCTCTCTTTCAAGAATGCTTCACCATCACCAGTTTTGTCTGTCTCGGTTAAGGCGTCCTCTTCATCAACTTCTCCTTCCGCAACTGTCGCTCACTCCCAAGAACTCAAGATTAAGAGTGT...

Protein

3 records

下载 Protein FASTA
XP_057774450.1
MALNSIASRPSSSLLSRKLRNSSANDSVVAHSARFLCFFNPIPLFSNLSFKNASPSPVLSVSVKASSSSTSPSATVAHSQELKIKSVPTQPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFDSLPPEDYKNGVLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRNGILSTPAVSAVIRKREANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDINLSQLGVTNCGPFSVE...
XP_057774451.1
MALNSIASRPSSSLLSRKLRNSSANDSVVAHSARFLCFFNPIPLFSNLSFKNASPSPVLSVSVKASSSSTSPSATVAHSQELKIKSVPTQPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFDSLPPEDYKNGVLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRNGILSTPAVSAVIRKREANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDINLSQLGVTNCGPFSVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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