Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002468`

染色体: Chr07 坐标: 23219763-23222951 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002468`
名称	SmilChr07G002468
描述	cytochrome P450 704C1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	23219763 - 23222951 / `-`

ID 对照

NCBI Gene ID	`LOC130993547`
GeneID	`130993547`
locus_tag	`-`
NCBI Name	`LOC130993547`
原始查询	`SmilChr07G002468`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 704C1-like
产物	cytochrome P450 704C1-like
Arabidopsis	`AT2G45510` (CYP704A2) cytochrome P450, family 704, subfamily A, polypeptide 2 [Source:NCBI gene (formerly Entrezgene);Acc:819159] identity=53.1; qcov=0.921; evalue=3.46e-170; confidence=high
Rice	`Os06g0129900` - identity=54.5; qcov=0.915; evalue=2.82e-180; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:130993547

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057774456.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057774456.1`
3	Nucleus	细胞核	0.00000	`XP_057774456.1`
4	Chromosome	染色体	0.00000	`XP_057774456.1`
5	Centromere	着丝粒	0.00000	`XP_057774456.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:23219918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr7:23220018`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C18
`Chr7:23220018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr7:23220246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B76
`Chr7:23220269`	`CT`	`C`	1bp_deletion	frameshift_variant	5	A21,B115,B124,B20,C48
`Chr7:23220269`	`CT`	`C`	1bp_deletion	CDS_variant	5	A21,B115,B124,B20,C48
`Chr7:23220458`	`G`	`GAT`	2bp_insertion	frameshift_variant	4	A4,C11,C13,C69
`Chr7:23220458`	`G`	`GAT`	2bp_insertion	CDS_variant	4	A4,C11,C13,C69
`Chr7:23220739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B51,B85,B91,C27
`Chr7:23221694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B36
`Chr7:23221774`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C61
`Chr7:23221774`	`C`	`CA`	1bp_insertion	CDS_variant	1	C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774456.1

524 aa

262

524

p450

PF00067 p450 66-504 aa

XP_057774457.1

515 aa

258

515

p450

PF00067 p450 57-495 aa

XP_057774458.1

502 aa

251

502

p450

PF00067 p450 44-482 aa

XP_057774459.1

493 aa

246

493

p450

PF00067 p450 66-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774456.1`	Pfam	`PF00067`	p450	Domain	66	504	2e-70	238.6	Cytochrome P450
`XP_057774457.1`	Pfam	`PF00067`	p450	Domain	57	495	1.8e-70	238.7	Cytochrome P450
`XP_057774458.1`	Pfam	`PF00067`	p450	Domain	44	482	1.7e-70	238.8	Cytochrome P450
`XP_057774459.1`	Pfam	`PF00067`	p450	Domain	66	461	1.2e-56	193.2	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918475.1
AATTCTCTGTTAAGGGATCGCCTGAGATGCCAATCGCGGCCTTACAGAGTGTGCTGCTGCTTTTAAGCAATGAGATGAAGAGAGACGGGCATAGTAAGAGCATGGAATGACAAATGCAAATGTATCTCCAATTAGGCTTCTGGATATTCCTCCATCATCATATGCTAATATCAAAATATCAAGAGAATTGATATCGTCTGCTCATCGACCACCTGTGGCTGGACCAATGATAAATCAACTCATACACTTCCACAGACTTT...

XM_057918474.1
ATGCTTGTAAAAGAAGATAAGATTTTTCTTCTTTTGACTTTAACAAACTTCTGTTTGCTCCGATGGATAGAAATCTTATCTAGTTGGATATAATTGTTGACGATGAAATAAAACAAGCTGTTGGCTTTACCTGTCCCTGTAAAAGACTGCAAAAAATGTGGCATATGCTTTTAATAAAAAAACACTGAAGATAAGACAAATAAACTTTAAAAAAAATAGTTTGATGATGACCTTGACATGCAATTATAAGCTTTTAGTTA...

CDS

4 records

下载 CDS FASTA

LOC130993547
ATGACAAATGCAAATGTATCTCCAATTAGGCTTCTGGATATTCCTCCATCATCATATGCTAATATCAAAATATCAAGAGAATTGATATCGTCTGCTCATCGACCACCTGTGGCTGGACCAATGATAAATCAACTCATACACTTCCACAGACTTTTTGATTACCAGATCAGACTTGCCCTGAGGTACCGCACATACCGTCTGATCACTGATTCGCACAGTGAAGTATATACTGCTGATCCGTTAAATGTTGAATACATCCT...

LOC130993547
ATGGTGTATTTATCTTATATGAAAGAGTCTACATCCATATTTGTTTTGAGAAGCTTTAATATGTGTAGGCTTCTGGATATTCCTCCATCATCATATGCTAATATCAAAATATCAAGAGAATTGATATCGTCTGCTCATCGACCACCTGTGGCTGGACCAATGATAAATCAACTCATACACTTCCACAGACTTTTTGATTACCAGATCAGACTTGCCCTGAGGTACCGCACATACCGTCTGATCACTGATTCGCACAGTGA...

Protein

4 records

下载 Protein FASTA

XP_057774456.1
MDIAVFILALLFLLLGALATRSYALTLLGFPLYIVGGFIVFSLVTYVRELISSAHRPPVAGPMINQLIHFHRLFDYQIRLALRYRTYRLITDSHSEVYTADPLNVEYILKTNFPNYGKGKYNRGIMKDLFGEGIFAVDGKKWRHQRKLASYEFSAKVLRDFSCSVFRSNAAKLAYKVHVEALASREMDLQDMLMKSAMDTMFKVGFGVDLDTLSGSDEISNQFIKAFDDSNVIVYWRYVDVFWKVKRFLNIGLERNLKEN...

XP_057774457.1
MVYLSYMKESTSIFVLRSFNMCRLLDIPPSSYANIKISRELISSAHRPPVAGPMINQLIHFHRLFDYQIRLALRYRTYRLITDSHSEVYTADPLNVEYILKTNFPNYGKGKYNRGIMKDLFGEGIFAVDGKKWRHQRKLASYEFSAKVLRDFSCSVFRSNAAKLAYKVHVEALASREMDLQDMLMKSAMDTMFKVGFGVDLDTLSGSDEISNQFIKAFDDSNVIVYWRYVDVFWKVKRFLNIGLERNLKENIKVIDNFVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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