当前解析结果
SmilChr07G002469| 统一新 Gene ID | SmilChr07G002469 |
|---|---|
| 名称 | SmilChr07G002469 |
| 描述 | pentatricopeptide repeat-containing protein At5g66520-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23222842 - 23224473 / - |
| NCBI Gene ID | LOC130993546 |
|---|---|
| GeneID | 130993546 |
| locus_tag | - |
| NCBI Name | LOC130993546 |
| 原始查询 | SmilChr07G002469 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g66520-like |
| 产物 | pentatricopeptide repeat-containing protein At5g66520-like |
| Arabidopsis | AT5G66520 (AT5G66520)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836784] identity=39.9; qcov=0.971; evalue=2.67e-138; confidence=medium |
| Rice | Os10g0400250- identity=40.3; qcov=0.86; evalue=1.3e-119; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993546 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057774455.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774455.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774455.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774455.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774455.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23223115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr7:23223211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr7:23223713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:23223778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C72,D1 |
Chr7:23223925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B21,B51,B85,B91,C27 |
Chr7:23223978 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | C52 |
Chr7:23223978 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774455.1PF01535
PPR 157-183 aa
PF13041
PPR_2 182-214 aa
PF01535
PPR 185-213 aa
PF13041
PPR_2 214-267 aa
PF01535
PPR 217-246 aa
PF01535
PPR 295-321 aa
PF13041
PPR_2 320-369 aa
PF13812
PPR_3 321-367 aa
PF01535
PPR 324-352 aa
PF01535
PPR 358-386 aa
PF01535
PPR 396-420 aa
PF20431
E_motif 441-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 157 | 183 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 182 | 214 | 1.3e-48 | 163.6 | PPR repeat family |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 185 | 213 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 214 | 267 | 1.3e-48 | 163.6 | PPR repeat family |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 217 | 246 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 295 | 321 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 320 | 369 | 1.3e-48 | 163.6 | PPR repeat family |
XP_057774455.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 321 | 367 | 1.4e-27 | 96.3 | Pentatricopeptide repeat domain |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 324 | 352 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 358 | 386 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF01535 |
PPR | Repeat | 396 | 420 | 3.7e-48 | 159.2 | PPR repeat |
XP_057774455.1 |
Pfam | PF20431 |
E_motif | Repeat | 441 | 501 | 8.6e-12 | 45.9 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。