Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002471`

染色体: Chr07 坐标: 23228882-23233709 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002471`
名称	SmilChr07G002471
描述	DEAD-box ATP-dependent RNA helicase 7-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	23228882 - 23233709 / `-`

ID 对照

NCBI Gene ID	`LOC130993550`
GeneID	`130993550`
locus_tag	`-`
NCBI Name	`LOC130993550`
原始查询	`SmilChr07G002471`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 7-like
产物	DEAD-box ATP-dependent RNA helicase 7-like
Arabidopsis	`AT5G62190` (PRH75) DEAD box RNA helicase (PRH75) [Source:NCBI gene (formerly Entrezgene);Acc:836340] identity=73.5; qcov=0.774; evalue=0; confidence=high
Rice	`Os09g0520700` (OsRH7) - identity=68.4; qcov=0.771; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0004386 (helicase activity); GO:0005524 (ATP binding)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF08152 (GUCT); PF26142 (DD_DDX21-DDX50)
InterPro	-
eggNOG	-
NR	GeneID:130993550

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774461.1`
2	Nucleolus	核仁	1.00000	`XP_057774461.1`
3	Cytoplasm	细胞质	0.20000	`XP_057774461.1`
4	Chromosome	染色体	0.00000	`XP_057774461.1`
5	Centromere	着丝粒	0.00000	`XP_057774461.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:23229161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C19
`Chr7:23229229`	`C`	`CTT`	2bp_insertion	frameshift_variant	46	A1,A14,A20,A7,A8,B10,B105,B106,B117,B118,B127,B139,B3,B30,B32,B34,B41,B57,B58,B70,B71,B72,B84,B85,B88,C11,C13,C14,C20,C26,C3,C38,C40,C42,C50,C52,C54,C55,C56,C58,C59,C67,C69,C75,C78,C82
`Chr7:23229306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr7:23229313`	`AT`	`A`	1bp_deletion	frameshift_variant	173	A1,A10,A11,A13,A14,A15,A20,A21,A22,A23,A3,A5,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B113,B117,B118,B119,B120,B122,B124,B125,B126,B127,B131,B132,B133,B134,B136,B139,B14,B140,B16,B17,B2,B21,B23,B25,B28,B3,B30,B32,B34,B36,B38,B39,B4,B40,B41,B46,B47,B5,B50,B51,B52,B54,B55,B56,B57,B58,B61,B62,B63,B64,B65,B69,B70,B71,B72,B73,B75,B76,B77,B78,B81,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B95,B96,B97,B98,C10,C11,C13,C14,C15,C16,C17,C18,C19,C20,C21,C24,C25,C26,C27,C28,C3,C30,C31,C35,C37,C38,C4,C40,C41,C42,C43,C45,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C61,C63,C64,C65,C66,C67,C69,C7,C70,C72,C74,C75,C76,C77,C78,C82,C83,C86,C87,C9,D1,D10,D11,D2,D3,D4,D6,D9
`Chr7:23229317`	`T`	`TC`	1bp_insertion	frameshift_variant	173	A1,A10,A11,A13,A14,A15,A20,A21,A22,A23,A3,A5,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B113,B117,B118,B119,B120,B122,B124,B125,B126,B127,B131,B132,B133,B134,B136,B139,B14,B140,B16,B17,B2,B21,B23,B25,B28,B3,B30,B32,B34,B36,B38,B39,B4,B40,B41,B46,B47,B5,B50,B51,B52,B54,B55,B56,B57,B58,B61,B62,B63,B64,B65,B69,B70,B71,B72,B73,B75,B76,B77,B78,B81,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B95,B96,B97,B98,C10,C11,C13,C14,C15,C16,C17,C18,C20,C21,C24,C25,C26,C27,C28,C3,C30,C31,C35,C37,C38,C4,C40,C41,C42,C43,C45,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C61,C63,C64,C65,C66,C67,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C82,C83,C86,C87,C9,D1,D10,D11,D2,D3,D4,D6,D9
`Chr7:23229570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B21,B51,B85,B91
`Chr7:23230576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:23230651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C72,D1
`Chr7:23230770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,D10
`Chr7:23231450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:23231670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:23231995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C72,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774461.1

702 aa

351

702

DEAD

Helicase_C

DD_DDX21-DDX50

GUCT

PF00270 DEAD 148-324 aa PF00271 Helicase_C 366-468 aa PF26142 DD_DDX21-DDX50 502-554 aa PF08152 GUCT 557-652 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774461.1`	Pfam	`PF00270`	DEAD	Domain	148	324	1.2e-45	156.0	DEAD/DEAH box helicase
`XP_057774461.1`	Pfam	`PF00271`	Helicase_C	Domain	366	468	2e-27	96.3	Helicase conserved C-terminal domain
`XP_057774461.1`	Pfam	`PF26142`	DD_DDX21-DDX50	Domain	502	554	3.5e-18	66.2	DDX21/DDX50 dimerisation domain
`XP_057774461.1`	Pfam	`PF08152`	GUCT	Domain	557	652	2.7e-29	101.9	GUCT (NUC152) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918478.1
GCAACTCTAATCCAAGGGTCAAAATCGCTGACAGATAGCCTATAAATGTGCAAACCCTAAACCCTTGATACCTCTCTCTCCCCCGCTGTTCCCTGCTTCTAACTGCCTTCAACTTGTGTTGCGGCAGCAGAGCAAAACAGCCCCCACCGCCACCTCCGCCCCCACTCTCGACGGCCGCGCACACAGAAAAATACTACACACAACCTCATATTTTCCTACTACTTATACATACAGAATATATATCTATCGACTGAGATGCC...

CDS

1 records

下载 CDS FASTA

LOC130993550
ATGCCTTCTGTTGTTATGGCTGAAGCTCAATCCGCCGACAAGAAGAAGATCATGAAGAAGTCCGAAGTTGCGGAGATGGAGCTGGTTGAGGAGAAGTCCGCTGAGAGAAAGATCAAAAAGGAGAAAAAGTCGAGCAAAAAGACCAAACTGACCTCGGAGCCTGACCTCGATGGTTCTAATTCCAATATCTCTGTCAAAATTAAAAAAGAAAAGAAGCGGAAGGCTTTGGAAATCGACGGCGATAATGAGGAGGAGAAGAG...

Protein

1 records

下载 Protein FASTA

XP_057774461.1
MPSVVMAEAQSADKKKIMKKSEVAEMELVEEKSAERKIKKEKKSSKKTKLTSEPDLDGSNSNISVKIKKEKKRKALEIDGDNEEEKSDTSSEMGEPMNSLAKKKKKMKFEDGHEEEEKEENPNAVSNFRISAPLRDNLKAKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGKAPSVLVLLPTRELATQVAADFEVYGGALGLSCCCLYGGSPYQAQQNQLKRGVDIVVGTPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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