当前解析结果
SmilChr07G002487| 统一新 Gene ID | SmilChr07G002487 |
|---|---|
| 名称 | SmilChr07G002487 |
| 描述 | uncharacterized SmilChr07G002487 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23540299 - 23548117 / + |
| NCBI Gene ID | LOC130993565 |
|---|---|
| GeneID | 130993565 |
| locus_tag | - |
| NCBI Name | LOC130993565 |
| 原始查询 | SmilChr07G002487 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.1; qcov=0.073; evalue=1.86e-19; confidence=weak |
| Rice | Os04g0191000- identity=29; qcov=0.487; evalue=2.45e-89; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993565 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774478.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057774478.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057774478.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057774478.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774478.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23540373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B110,B62 |
Chr7:23540386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:23540388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C68 |
Chr7:23540432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,A23,B38,C87,D2 |
Chr7:23540513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,C24,C29,C46 |
Chr7:23540610 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr7:23540610 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B123 |
Chr7:23540624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B50,C32,C68 |
Chr7:23540641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B69,B74,C18,C4 |
Chr7:23540684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr7:23540699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr7:23540800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774478.1PF13650
Asp_protease_2 632-724 aa
PF00078
RVT_1 989-1144 aa
PF17919
RT_RNaseH_2 1208-1306 aa
PF17917
RT_RNaseH 1236-1336 aa
PF17921
Integrase_H2C2 1436-1493 aa
PF00665
rve 1514-1607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774478.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 632 | 724 | 1.4e-06 | 29.6 | Aspartyl protease |
XP_057774478.1 |
Pfam | PF00078 |
RVT_1 | Domain | 989 | 1144 | 1e-29 | 104.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057774478.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1208 | 1306 | 2e-32 | 111.9 | RNase H-like domain found in reverse transcriptase |
XP_057774478.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1236 | 1336 | 2.3e-37 | 128.0 | RNase H-like domain found in reverse transcriptase |
XP_057774478.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1436 | 1493 | 4.8e-12 | 46.5 | Integrase zinc binding domain |
XP_057774478.1 |
Pfam | PF00665 |
rve | Domain | 1514 | 1607 | 9.2e-17 | 61.9 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。