当前解析结果
SmilChr07G002488| 统一新 Gene ID | SmilChr07G002488 |
|---|---|
| 名称 | SmilChr07G002488 |
| 描述 | NAC domain-containing protein 7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23553769 - 23557171 / + |
| NCBI Gene ID | LOC130993570 |
|---|---|
| GeneID | 130993570 |
| locus_tag | - |
| NCBI Name | LOC130993570 |
| 原始查询 | SmilChr07G002488 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAC domain-containing protein 7 |
| 产物 | NAC domain-containing protein 7 |
| Arabidopsis | AT1G12260 (NAC007)NAC 007 [Source:NCBI gene (formerly Entrezgene);Acc:837780] identity=55; qcov=1.21; evalue=7.53e-140; confidence=high |
| Rice | Os02g0643600 (ONAC052)- identity=54.2; qcov=1.12; evalue=3.64e-124; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF02365 (NAM) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993570 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774481.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057774481.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057774481.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057774481.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057774481.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23555822 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C69 |
Chr7:23555822 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C69 |
Chr7:23555825 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C69 |
Chr7:23555825 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C69 |
Chr7:23555830 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | C11,C69 |
Chr7:23555830 |
A |
AC |
1bp_insertion | CDS_variant | 2 | C11,C69 |
Chr7:23555938 |
A |
AAT |
2bp_insertion | stop_gained,frameshift_variant | 42 | A15,A2,A25,A5,B112,B123,B130,B2,B21,B26,B38,B39,B4,B5,B50,B51,B57,B58,B6,B65,B66,B72,B74,B75,B79,B81,B82,B93,C1,C10,C11,C18,C22,C23,C51,C58,C67,C69,C76,C82,D1,D9 |
Chr7:23556089 |
G |
GTT |
2bp_insertion | frameshift_variant | 2 | B69,B7 |
Chr7:23556089 |
G |
GTT |
2bp_insertion | CDS_variant | 2 | B69,B7 |
Chr7:23556181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,C15,C21,C77,C83 |
Chr7:23556532 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | A25,B50,B65,B8,C18,C36,C76 |
Chr7:23556634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774481.1PF02365
NAM 8-135 aa
XP_057774482.1PF02365
NAM 8-135 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774481.1 |
Pfam | PF02365 |
NAM | Family | 8 | 135 | 2.8e-49 | 167.4 | No apical meristem (NAM) protein |
XP_057774482.1 |
Pfam | PF02365 |
NAM | Family | 8 | 135 | 2.8e-49 | 167.4 | No apical meristem (NAM) protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。