当前解析结果
SmilChr07G002495| 统一新 Gene ID | SmilChr07G002495 |
|---|---|
| 名称 | SmilChr07G002495 |
| 描述 | uncharacterized SmilChr07G002495 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23646722 - 23647951 / - |
| NCBI Gene ID | LOC130993575 |
|---|---|
| GeneID | 130993575 |
| locus_tag | - |
| NCBI Name | LOC130993575 |
| 原始查询 | SmilChr07G002495 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Octicosapeptide/Phox/Bem1p family protein [Source:NCBI gene (formerly Entrezgene);Acc:822258]; symbol=AT3G26510; hit=AT3G26510; species=arabidopsis; confidence=medium |
| 产物 | Octicosapeptide/Phox/Bem1p family protein [Source:NCBI gene (formerly Entrezgene);Acc:822258]; symbol=AT3G26510; hit=AT3G26510; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G26510 (AT3G26510)Octicosapeptide/Phox/Bem1p family protein [Source:NCBI gene (formerly Entrezgene);Acc:822258] identity=63.7; qcov=0.574; evalue=5.32e-46; confidence=medium |
| Rice | Os11g0444700 (OsPB1)- identity=49.4; qcov=0.815; evalue=2.32e-42; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00564 (PB1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993575 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774486.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057774486.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774486.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774486.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774486.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23646968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr7:23647072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:23647126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,C28,D4 |
Chr7:23647163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:23647228 |
G |
GTA |
2bp_insertion | frameshift_variant | 11 | A15,B101,B134,B136,C15,C21,C27,C30,C83,D10,D9 |
Chr7:23647248 |
TA |
T |
1bp_deletion | frameshift_variant | 17 | A15,B101,B134,B136,B14,B47,C15,C21,C27,C30,C41,C42,C77,C83,D10,D6,D9 |
Chr7:23647715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:23647716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:23647730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:23647732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774486.1PF00564
PB1 32-106 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774486.1 |
Pfam | PF00564 |
PB1 | Domain | 32 | 106 | 6.3e-19 | 68.4 | PB1 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。