当前解析结果
SmilChr07G002503| 统一新 Gene ID | SmilChr07G002503 |
|---|---|
| 名称 | SmilChr07G002503 |
| 描述 | ABC transporter B family member 26, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23741350 - 23748399 / - |
| NCBI Gene ID | LOC130993582 |
|---|---|
| GeneID | 130993582 |
| locus_tag | - |
| NCBI Name | LOC130993582 |
| 原始查询 | SmilChr07G002503 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 26, chloroplastic |
| 产物 | ABC transporter B family member 26%2C chloroplastic |
| Arabidopsis | AT1G70610 (ABCB26)transporter associated with antigen processing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:843398] identity=77; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0911300 (OsABCB24)- identity=69.5; qcov=0.704; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993582 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774497.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057774497.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057774499.1 |
| 4 | Vacuole | 液泡 | 0.60000 | XP_057774499.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057774499.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23742066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B46 |
Chr7:23742233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,C30,C57,C86,D9 |
Chr7:23742424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:23744704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,D10 |
Chr7:23745795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B115,B124,B20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774497.1PF00664
ABC_membrane 141-407 aa
PF00005
ABC_tran 477-649 aa
XP_057774498.1PF00664
ABC_membrane 141-407 aa
PF00005
ABC_tran 477-622 aa
XP_057774499.1PF00664
ABC_membrane 9-219 aa
PF00005
ABC_tran 289-461 aa
XP_057774501.1PF00664
ABC_membrane 9-219 aa
PF00005
ABC_tran 289-434 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774497.1 |
Pfam | PF00664 |
ABC_membrane | Family | 141 | 407 | 5.8e-35 | 122.0 | ABC transporter transmembrane region |
XP_057774497.1 |
Pfam | PF00005 |
ABC_tran | Domain | 477 | 649 | 1.2e-28 | 101.1 | ABC transporter |
XP_057774498.1 |
Pfam | PF00664 |
ABC_membrane | Family | 141 | 407 | 6e-35 | 122.0 | ABC transporter transmembrane region |
XP_057774498.1 |
Pfam | PF00005 |
ABC_tran | Domain | 477 | 622 | 1e-32 | 114.3 | ABC transporter |
XP_057774499.1 |
Pfam | PF00664 |
ABC_membrane | Family | 9 | 219 | 2.2e-33 | 116.9 | ABC transporter transmembrane region |
XP_057774499.1 |
Pfam | PF00005 |
ABC_tran | Domain | 289 | 461 | 5.8e-29 | 102.1 | ABC transporter |
XP_057774501.1 |
Pfam | PF00664 |
ABC_membrane | Family | 9 | 219 | 2.3e-33 | 116.8 | ABC transporter transmembrane region |
XP_057774501.1 |
Pfam | PF00005 |
ABC_tran | Domain | 289 | 434 | 5.5e-33 | 115.2 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。