Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002503

染色体: Chr07 坐标: 23741350-23748399 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002503
名称SmilChr07G002503
描述ABC transporter B family member 26, chloroplastic
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向23741350 - 23748399 / -

ID 对照

NCBI Gene IDLOC130993582
GeneID130993582
locus_tag-
NCBI NameLOC130993582
原始查询SmilChr07G002503

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ABC transporter B family member 26, chloroplastic
产物ABC transporter B family member 26%2C chloroplastic
ArabidopsisAT1G70610 (ABCB26)
transporter associated with antigen processing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:843398]
identity=77; qcov=0.998; evalue=0; confidence=high
RiceOs01g0911300 (OsABCB24)
-
identity=69.5; qcov=0.704; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG-
PfamPF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro-
eggNOG-
NRGeneID:130993582

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057774497.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057774497.1
3 Endoplasmic reticulum 内质网 0.60000 XP_057774499.1
4 Vacuole 液泡 0.60000 XP_057774499.1
5 Vacuole membrane 液泡膜 0.60000 XP_057774499.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:23742066 G A EMS_canonical_SNV CDS_variant 2 B126,B46
Chr7:23742233 G A EMS_canonical_SNV CDS_variant 5 B136,C30,C57,C86,D9
Chr7:23742424 C T EMS_canonical_SNV CDS_variant 1 B69
Chr7:23744704 C T EMS_canonical_SNV CDS_variant 2 C48,D10
Chr7:23745795 C T EMS_canonical_SNV CDS_variant 4 A21,B115,B124,B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057774497.1
728 aa
N
1
364
728
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 141-407 aa PF00005 ABC_tran 477-649 aa
XP_057774498.1
701 aa
N
1
350
701
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 141-407 aa PF00005 ABC_tran 477-622 aa
XP_057774499.1
540 aa
N
1
270
540
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 9-219 aa PF00005 ABC_tran 289-461 aa
XP_057774501.1
513 aa
N
1
256
513
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 9-219 aa PF00005 ABC_tran 289-434 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774497.1 Pfam PF00664 ABC_membrane Family 141 407 5.8e-35 122.0 ABC transporter transmembrane region
XP_057774497.1 Pfam PF00005 ABC_tran Domain 477 649 1.2e-28 101.1 ABC transporter
XP_057774498.1 Pfam PF00664 ABC_membrane Family 141 407 6e-35 122.0 ABC transporter transmembrane region
XP_057774498.1 Pfam PF00005 ABC_tran Domain 477 622 1e-32 114.3 ABC transporter
XP_057774499.1 Pfam PF00664 ABC_membrane Family 9 219 2.2e-33 116.9 ABC transporter transmembrane region
XP_057774499.1 Pfam PF00005 ABC_tran Domain 289 461 5.8e-29 102.1 ABC transporter
XP_057774501.1 Pfam PF00664 ABC_membrane Family 9 219 2.3e-33 116.8 ABC transporter transmembrane region
XP_057774501.1 Pfam PF00005 ABC_tran Domain 289 434 5.5e-33 115.2 ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057918515.1
TATCCCCGCCCTAAACAAATGGCGCTGAGCTATTTTTAGATCGATGAGCCTAATTTCTCCTACACGATTTAGTTTCCTCCTTTAATTACTGATTTTCTGCAGTATTACTACTAATTGATGTAATTCTCAGCGTGCACTCTGCATGTTCTGCGGAATTGCTTCTTTTATTTCTCTTCTTGACTTTTTGTCTGTACGTGGAATTGTGTGGTGTGGTGTCACCGCAAGACAACACGTCCACACAAATTCATCTTGGATCAAAA...
XM_057918514.1
TATCCCCGCCCTAAACAAATGGCGCTGAGCTATTTTTAGATCGATGAGCCTAATTTCTCCTACACGATTTAGTTTCCTCCTTTAATTACTGATTTTCTGCAGTATTACTACTAATTGATGTAATTCTCAGCGTGCACTCTGCATGTTCTGCGGAATTGCTTCTTTTATTTCTCTTCTTGACTTTTTGTCTGTACGTGGAATTGTGTGGTGTGGTGTCACCGCAAGACAACACGTCCACACAAATTCATCTTGGATCAAAA...

CDS

4 records

下载 CDS FASTA
LOC130993582
ATGGCTCTCTCTCTCTGGCTCTGCAACCCCCAACTCCTCCCTCCGTTTCCCGTCCAATACAGCAAGTTTTCAACCAAAATTATTCGTTCCCCAAATCAAAATCTCAATCGTGAAAAACCCCAACTTCAGCGCTTCGCCTCTAGTAGAAGATTCCGCCACATTTCTACTCTGAAATCAGCTTCCGTCAACGGCTACCCGATTACCAAAGAGGATGGAGTTCCTTCCACCGGCGGTGAGAAAATTGAATTGAGTGAAAAGCT...
LOC130993582
ATGGCTCTCTCTCTCTGGCTCTGCAACCCCCAACTCCTCCCTCCGTTTCCCGTCCAATACAGCAAGTTTTCAACCAAAATTATTCGTTCCCCAAATCAAAATCTCAATCGTGAAAAACCCCAACTTCAGCGCTTCGCCTCTAGTAGAAGATTCCGCCACATTTCTACTCTGAAATCAGCTTCCGTCAACGGCTACCCGATTACCAAAGAGGATGGAGTTCCTTCCACCGGCGGTGAGAAAATTGAATTGAGTGAAAAGCT...

Protein

4 records

下载 Protein FASTA
XP_057774497.1
MALSLWLCNPQLLPPFPVQYSKFSTKIIRSPNQNLNREKPQLQRFASSRRFRHISTLKSASVNGYPITKEDGVPSTGGEKIELSEKLKKWVKFAREIFPGGDWWRLSTEEVGDVMAAKPVTVFRALKKMWDLIAEDRWVVFTAFVTLIITALSEISIPHYLTASIFSAQSSTIALFHRNLRLLVMLCITAAICSGVRGCMFGIANMILVKRVRERLYSTLLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILR...
XP_057774498.1
MALSLWLCNPQLLPPFPVQYSKFSTKIIRSPNQNLNREKPQLQRFASSRRFRHISTLKSASVNGYPITKEDGVPSTGGEKIELSEKLKKWVKFAREIFPGGDWWRLSTEEVGDVMAAKPVTVFRALKKMWDLIAEDRWVVFTAFVTLIITALSEISIPHYLTASIFSAQSSTIALFHRNLRLLVMLCITAAICSGVRGCMFGIANMILVKRVRERLYSTLLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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