当前解析结果
SmilChr07G002505| 统一新 Gene ID | SmilChr07G002505 |
|---|---|
| 名称 | SmilChr07G002505 |
| 描述 | uncharacterized SmilChr07G002505 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23768313 - 23772345 / + |
| NCBI Gene ID | LOC130993584 |
|---|---|
| GeneID | 130993584 |
| locus_tag | - |
| NCBI Name | LOC130993584 |
| 原始查询 | SmilChr07G002505 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT5G15685 (AT5G15685)mutator transposase MUDRA protein [Source:NCBI gene (formerly Entrezgene);Acc:28721163] identity=31.2; qcov=0.465; evalue=4.44e-41; confidence=low |
| Rice | Os06g0704400- identity=32.2; qcov=0.689; evalue=1.9e-61; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF10551 (MULE); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993584 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774503.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057774503.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057774503.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057774503.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057774503.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23769030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:23769036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:23769046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr7:23769085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:23769092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:23769121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B35,C30,C36,C79 |
Chr7:23769138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B69,C35,C7,D6 |
Chr7:23769152 |
G |
A |
EMS_canonical_SNV | stop_gained | 15 | A20,B114,B129,B134,B137,B22,B27,B44,B63,B71,B72,B90,B92,C26,C49 |
Chr7:23769162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B59,B63,B75,D6 |
Chr7:23769229 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B13,B70 |
Chr7:23769286 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | B55,C51 |
Chr7:23769286 |
GT |
G |
1bp_deletion | CDS_variant | 2 | B55,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774503.1PF26130
PB1-like 6-97 aa
PF03108
DBD_Tnp_Mut 299-362 aa
PF10551
MULE 491-586 aa
PF00872
Transposase_mut 509-638 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774503.1 |
Pfam | PF26130 |
PB1-like | Domain | 6 | 97 | 8.1e-17 | 62.1 | PB1-like domain |
XP_057774503.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 299 | 362 | 1.4e-08 | 35.0 | MuDR family transposase |
XP_057774503.1 |
Pfam | PF10551 |
MULE | Domain | 491 | 586 | 2.3e-15 | 57.5 | MULE transposase domain |
XP_057774503.1 |
Pfam | PF00872 |
Transposase_mut | Family | 509 | 638 | 8.5e-07 | 28.9 | Transposase, Mutator family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。