当前解析结果
SmilChr07G002523| 统一新 Gene ID | SmilChr07G002523 |
|---|---|
| 名称 | SmilChr07G002523 |
| 描述 | uncharacterized SmilChr07G002523 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23921786 - 23923873 / + |
| NCBI Gene ID | LOC130993601 |
|---|---|
| GeneID | 130993601 |
| locus_tag | - |
| NCBI Name | LOC130993601 |
| 原始查询 | SmilChr07G002523 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451]; symbol=AT5G05670; hit=AT5G05670; species=arabidopsis; confidence=high |
| 产物 | signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451]; symbol=AT5G05670; hit=AT5G05670; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G05670 (AT5G05670)signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451] identity=67.7; qcov=0.829; evalue=2.65e-94; confidence=high |
| Rice | Os08g0524000- identity=65.6; qcov=0.829; evalue=2.95e-89; confidence=high |
| GO | GO:0005785 (signal recognition particle receptor complex); GO:0045047 (protein targeting to ER) |
| KEGG | smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00009 (GTP_EFTU); PF00025 (Arf); PF04670 (Gtr1_RagA); PF09439 (SRPRB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993601 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057774520.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057774520.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057774520.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057774520.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057774520.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23921846 |
GCC |
G |
2bp_deletion | frameshift_variant | 3 | C49,C7,C87 |
Chr7:23921846 |
GCC |
G |
2bp_deletion | CDS_variant | 3 | C49,C7,C87 |
Chr7:23921853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C49,C7,C87 |
Chr7:23921890 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B3,C26,C87 |
Chr7:23921890 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B3,C26,C87 |
Chr7:23922034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr7:23922040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,B85 |
Chr7:23922318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,C14,C39 |
Chr7:23922339 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B29 |
Chr7:23922339 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B29 |
Chr7:23922403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C39 |
Chr7:23922406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774520.1PF09439
SRPRB 18-195 aa
PF00025
Arf 19-160 aa
PF04670
Gtr1_RagA 21-167 aa
PF00009
GTP_EFTU 66-200 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774520.1 |
Pfam | PF09439 |
SRPRB | Domain | 18 | 195 | 4.1e-33 | 115.0 | Signal recognition particle receptor beta subunit |
XP_057774520.1 |
Pfam | PF00025 |
Arf | Domain | 19 | 160 | 1.5e-13 | 51.3 | ADP-ribosylation factor family |
XP_057774520.1 |
Pfam | PF04670 |
Gtr1_RagA | Domain | 21 | 167 | 1.3e-07 | 32.0 | Gtr1/RagA G protein conserved region |
XP_057774520.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 66 | 200 | 9.5e-08 | 32.6 | Elongation factor Tu GTP binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。