Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002538`

染色体: Chr07 坐标: 24079147-24083049 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002538`
名称	SmilChr07G002538
描述	ADP-ribosylation factor 2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24079147 - 24083049 / `-`

ID 对照

NCBI Gene ID	`LOC130993614`
GeneID	`130993614`
locus_tag	`-`
NCBI Name	`LOC130993614`
原始查询	`SmilChr07G002538`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor 2
产物	ADP-ribosylation factor 2
Arabidopsis	`AT5G14670` (ARFA1B) ADP-ribosylation factor A1B [Source:NCBI gene (formerly Entrezgene);Acc:831319] identity=98.9; qcov=1; evalue=1.28e-133; confidence=high
Rice	`Os05g0489600` (ARF) - identity=99.5; qcov=1; evalue=6.68e-135; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:130993614

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Trans-golgi network	Trans-golgi network	1.00000	`XP_057774544.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057774547.1`
3	Vesicle	囊泡	1.00000	`XP_057774544.1`
4	Endosome	内体	1.00000	`XP_057774544.1`
5	Endosome membrane	内体膜	0.80000	`XP_057774547.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24080008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:24080945`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B99
`Chr7:24080945`	`TC`	`T`	1bp_deletion	CDS_variant	1	B99
`Chr7:24081208`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C5
`Chr7:24081208`	`TG`	`T`	1bp_deletion	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774544.1

183 aa

183

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

XP_057774545.1

183 aa

183

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

XP_057774547.1

181 aa

181

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

XP_057774548.1

181 aa

181

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774544.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.3e-81	272.9	ADP-ribosylation factor family
`XP_057774544.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.6e-13	49.6	Signal recognition particle receptor beta subunit
`XP_057774544.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.8e-05	23.7	50S ribosome-binding GTPase
`XP_057774544.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.3e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057774544.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.2	Gtr1/RagA G protein conserved region
`XP_057774544.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.5e-12	46.3	Ras family
`XP_057774545.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.3e-81	272.9	ADP-ribosylation factor family
`XP_057774545.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.6e-13	49.6	Signal recognition particle receptor beta subunit
`XP_057774545.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.8e-05	23.7	50S ribosome-binding GTPase
`XP_057774545.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.3e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057774545.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.2	Gtr1/RagA G protein conserved region
`XP_057774545.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.5e-12	46.3	Ras family
`XP_057774547.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.2e-81	273.0	ADP-ribosylation factor family
`XP_057774547.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.5e-13	49.7	Signal recognition particle receptor beta subunit
`XP_057774547.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.6e-05	23.7	50S ribosome-binding GTPase
`XP_057774547.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.1e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057774547.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.3	Gtr1/RagA G protein conserved region
`XP_057774547.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.3e-12	46.3	Ras family
`XP_057774548.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.2e-81	273.0	ADP-ribosylation factor family
`XP_057774548.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.5e-13	49.7	Signal recognition particle receptor beta subunit
`XP_057774548.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.6e-05	23.7	50S ribosome-binding GTPase
`XP_057774548.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.1e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057774548.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.3	Gtr1/RagA G protein conserved region
`XP_057774548.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.3e-12	46.3	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918562.1
GATCTGGTGGCAACGTGGTCATTTGATTAACATCCGGTTGCGGCATTCCGATATAAATATCCGCTGGCTGAAATTTCTCATTACTACTTCTCAGAAAAGGAAAATAGAAAGTTTATAATCTATCGCGTTGTTCTGAAGCAGCTCCCTATTTCTCCGCGGACCTAAGTATAAAACAGAAATGGGGCTGACTTTCACTAAGCTGTTTAGCCGGCTATTCGCTAAGAAGGAGATGCGGATTTTGATGGTTGGTCTTGATGCTG...

XM_057918561.1
ATTAACATCCGGTTGCGGCATTCCGATATAAATATCCGCTGGCTGAAATTTCTCATTACTACTTCTCAGAAAAGGAAAATAGAAAGTTTATAATCTATCGCGTTGTTCTGAAGCAGCTCCCTATTTCTCCGCGTACGCTCTCTACCACCTCCCCAGATCTATTGTTTTCTGGGACCTAAGTATAAAACAGAAATGGGGCTGACTTTCACTAAGCTGTTTAGCCGGCTATTCGCTAAGAAGGAGATGCGGATTTTGATGGT...

CDS

4 records

下载 CDS FASTA

LOC130993614
ATGGGGCTGACTTTCACTAAGCTGTTTAGCCGGCTATTCGCTAAGAAGGAGATGCGGATTTTGATGGTTGGTCTTGATGCTGCTGGTAAGACAACCATCCTGTACAAGCTCAAGCTCGGAGAGATTGTCACCACCATTCCAACCATTGGTTTCAATGTGGAGACTGTTGAATACAAGAACATTAGCTTCACAGTTTGGGATGTTGGGGGTCAGGACAAGATCCGCCCATTGTGGAGGCACTACTTCCAAAACACACAGGG...

Protein

4 records

下载 Protein FASTA

XP_057774544.1
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKGGR

XP_057774545.1
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKGGR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器