当前解析结果
SmilChr07G002545| 统一新 Gene ID | SmilChr07G002545 |
|---|---|
| 名称 | SmilChr07G002545 |
| 描述 | uncharacterized SmilChr07G002545 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24147915 - 24153476 / + |
| NCBI Gene ID | LOC130993994 |
|---|---|
| GeneID | 130993994 |
| locus_tag | - |
| NCBI Name | LOC130993994 |
| 原始查询 | SmilChr07G002545 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.7; qcov=0.258; evalue=5.78e-41; confidence=weak |
| Rice | Os06g0484800- identity=29.4; qcov=0.512; evalue=5.84e-103; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0004751 (ribose-5-phosphate isomerase activity); GO:0009052 (pentose-phosphate shunt, non-oxidative branch) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF06026 (Rib_5-P_isom_A); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993994 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775017.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775017.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775017.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775017.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24147936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B98 |
Chr7:24147942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,C59 |
Chr7:24147947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B136,C57,C79 |
Chr7:24147950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:24147953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,B99 |
Chr7:24147997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,A7,B56,B96,C80 |
Chr7:24148030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B136,C10,C75 |
Chr7:24148057 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B13,B18,B85 |
Chr7:24148057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B18,B85 |
Chr7:24148061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B45 |
Chr7:24148063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C9,D4 |
Chr7:24148067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775017.1PF03372
Exo_endo_phos 4-220 aa
PF00078
RVT_1 496-757 aa
PF13966
zf-RVT 1013-1091 aa
PF13456
RVT_3 1221-1300 aa
PF06026
Rib_5-P_isom_A 1520-1588 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775017.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 4 | 220 | 1.4e-05 | 25.7 | Endonuclease/Exonuclease/phosphatase family |
XP_057775017.1 |
Pfam | PF00078 |
RVT_1 | Domain | 496 | 757 | 1.7e-30 | 107.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775017.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1013 | 1091 | 2.5e-12 | 48.0 | zinc-binding in reverse transcriptase |
XP_057775017.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1221 | 1300 | 2.7e-11 | 44.2 | Reverse transcriptase-like |
XP_057775017.1 |
Pfam | PF06026 |
Rib_5-P_isom_A | Family | 1520 | 1588 | 1.3e-09 | 38.6 | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。