Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002566`

染色体: Chr07 坐标: 24481827-24484833 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002566`
名称	SmilChr07G002566
描述	uncharacterized SmilChr07G002566
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24481827 - 24484833 / `+`

ID 对照

NCBI Gene ID	`LOC130993635`
GeneID	`130993635`
locus_tag	`-`
NCBI Name	`LOC130993635`
原始查询	`SmilChr07G002566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carboxyl-terminal peptidase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:837618]; symbol=AT1G10750; hit=AT1G10750; species=arabidopsis; confidence=high
产物	carboxyl-terminal peptidase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:837618]; symbol=AT1G10750; hit=AT1G10750; species=arabidopsis; confidence=high
Arabidopsis	`AT1G10750` (AT1G10750) carboxyl-terminal peptidase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:837618] identity=65.9; qcov=0.759; evalue=2.98e-108; confidence=high
Rice	`Os06g0474500` - identity=57.1; qcov=0.793; evalue=1.92e-86; confidence=high
GO	-
KEGG	-
Pfam	PF03080 (Neprosin); PF14365 (Neprosin_AP)
InterPro	-
eggNOG	-
NR	GeneID:130993635

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057774581.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057774582.1`
3	Cell wall	细胞壁	0.20000	`XP_057774581.1`
4	Secreted	分泌到胞外	0.20000	`XP_057774581.1`
5	Nucleus	细胞核	0.00000	`XP_057774582.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24482808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:24483344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B119,B122,B132,B81
`Chr7:24484299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774581.1

435 aa

218

435

Neprosin_AP

Neprosin

PF14365 Neprosin_AP 87-193 aa PF03080 Neprosin 217-428 aa

XP_057774582.1

294 aa

147

294

Neprosin_AP

Neprosin

PF14365 Neprosin_AP 87-193 aa PF03080 Neprosin 217-262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774581.1`	Pfam	`PF14365`	Neprosin_AP	Family	87	193	1.2e-34	120.1	Neprosin activation peptide
`XP_057774581.1`	Pfam	`PF03080`	Neprosin	Family	217	428	2.8e-87	292.3	Neprosin
`XP_057774582.1`	Pfam	`PF14365`	Neprosin_AP	Family	87	193	5.8e-35	121.1	Neprosin activation peptide
`XP_057774582.1`	Pfam	`PF03080`	Neprosin	Family	217	262	5.6e-15	56.0	Neprosin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918598.1
AAATATATAACCCCTCACTGCCCACATTCTTTTGAGTCTTTCTCTCCCCATTCACATTCTCTCTTCCAAGAAATGAATCAGTAGCTAGCAACCAGAAACTCCTATATTTATATCCCCCAACTCCACATGGACTAAACTCTAAAAATCCCATTTATTTCTGCCTAGAAATCATACATTCATTCTGTCAGAAAATAACATAAACAGGAGCCAAATCACAAAAAAAGAGCTTCATTTTCTTCAAAAAGTATAGGAAATGCCAA...

XM_057918599.1
GCCCACATTCTTTTGAGTCTTTCTCTCCCCATTCACATTCTCTCTTCCAAGAAATGAATCAGTAGCTAGCAACCAGAAACTCCTATATTTATATCCCCCAACTCCACATGGACTAAACTCTAAAAATCCCATTTATTTCTGCCTAGAAATCATACATTCATTCTGTCAGAAAATAACATAAACAGGAGCCAAATCACAAAAAAAGAGCTTCATTTTCTTCAAAAAGTATAGGAAATGCCAAGAAAGTGAAGCGTTTGGTA...

CDS

2 records

下载 CDS FASTA

LOC130993635
ATGTTGATGGATTGGCAATTCGCAAACTCTAGCAACACATGGCGTAGATGTTTGGATCACAGAAGCAGACAACAACAACATGAATGTAGAGGAGGAAGAAGCTACAAAATAATTTGGACATTGGTCTTGTTCGTATTCTTGGTGTGCGTGTGCCCCGTTCGATCACAGAACTTCAACGACACCGATCACGACTTCCGACCAAAGAAGATGAAGCTCCTCAGAGCCCATCTCGGCAGGATTAACAAGCCCGCCGTTAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057774581.1
MLMDWQFANSSNTWRRCLDHRSRQQQHECRGGRSYKIIWTLVLFVFLVCVCPVRSQNFNDTDHDFRPKKMKLLRAHLGRINKPAVKTIQSPDGDIIDCVLSHKQPAFDHPKLKGQKPLDPPERPKGPKSRGMYEENFQMWSMSNEFCPQGTIPIRRTRVKDIVRATNIQTFGKKIRPVVRDTSSNGHEHAVGYVSGDEYYGAKASINVWAPVVANQYEFSLSQMWVIAGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYW...

XP_057774582.1
MLMDWQFANSSNTWRRCLDHRSRQQQHECRGGRSYKIIWTLVLFVFLVCVCPVRSQNFNDTDHDFRPKKMKLLRAHLGRINKPAVKTIQSPDGDIIDCVLSHKQPAFDHPKLKGQKPLDPPERPKGPKSRGMYEENFQMWSMSNEFCPQGTIPIRRTRVKDIVRATNIQTFGKKIRPVVRDTSSNGHEHAVGYVSGDEYYGAKASINVWAPVVANQYEFSLSQMWVIAGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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