Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002573`

染色体: Chr07 坐标: 24559642-24568796 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002573`
名称	SmilChr07G002573
描述	ubiquitin-like-specific protease 1D
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24559642 - 24568796 / `-`

ID 对照

NCBI Gene ID	`LOC130993639`
GeneID	`130993639`
locus_tag	`-`
NCBI Name	`LOC130993639`
原始查询	`SmilChr07G002573`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-like-specific protease 1D
产物	ubiquitin-like-specific protease 1D
Arabidopsis	`AT1G60220` (ULP1D) UB-like protease 1D [Source:NCBI gene (formerly Entrezgene);Acc:842317] identity=39.9; qcov=0.976; evalue=1.81e-111; confidence=medium
Rice	`Os06g0487900` (OTS1) - identity=50.2; qcov=0.507; evalue=1.56e-94; confidence=medium
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:130993639

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774585.1`
2	Chromosome	染色体	0.00000	`XP_057774585.1`
3	Centromere	着丝粒	0.00000	`XP_057774585.1`
4	Chromatin	染色质	0.00000	`XP_057774585.1`
5	Telomere	端粒	0.00000	`XP_057774585.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24560056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,C11,C54,C69,C75
`Chr7:24560157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:24562335`	`ACC`	`A`	2bp_deletion	frameshift_variant	24	A19,A23,A6,B10,B139,B3,B40,B5,B54,B55,B79,B95,C12,C13,C29,C39,C43,C48,C69,C71,C77,C82,C87,D5
`Chr7:24562338`	`ACC`	`A`	2bp_deletion	frameshift_variant	24	A19,A23,A6,B10,B139,B3,B40,B5,B54,B55,B79,B95,C12,C13,C29,C39,C43,C48,C69,C71,C77,C82,C87,D5
`Chr7:24562852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,D11
`Chr7:24562862`	`T`	`TG`	1bp_insertion	frameshift_variant	247	A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:24562865`	`TG`	`T`	1bp_deletion	frameshift_variant	247	A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C13,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:24562924`	`A`	`AC`	1bp_insertion	frameshift_variant	247	A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B15,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B91,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:24562929`	`GA`	`G`	1bp_deletion	frameshift_variant	249	A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B91,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:24563947`	`AT`	`A`	1bp_deletion	frameshift_variant	5	A21,B20,C45,C67,C7
`Chr7:24563947`	`AT`	`A`	1bp_deletion	CDS_variant	5	A21,B20,C45,C67,C7
`Chr7:24563951`	`C`	`CA`	1bp_insertion	frameshift_variant	4	A21,B20,C45,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774585.1

557 aa

278

557

Peptidase_C48

PF02902 Peptidase_C48 308-501 aa

XP_057774586.1

556 aa

278

556

Peptidase_C48

PF02902 Peptidase_C48 307-500 aa

XP_057774587.1

555 aa

278

555

Peptidase_C48

PF02902 Peptidase_C48 306-499 aa

XP_057774588.1

538 aa

269

538

Peptidase_C48

PF02902 Peptidase_C48 308-508 aa

XP_057774589.1

537 aa

268

537

Peptidase_C48

PF02902 Peptidase_C48 307-507 aa

XP_057774590.1

536 aa

268

536

Peptidase_C48

PF02902 Peptidase_C48 306-506 aa

XP_057774591.1

535 aa

268

535

Peptidase_C48

PF02902 Peptidase_C48 305-505 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774585.1`	Pfam	`PF02902`	Peptidase_C48	Domain	308	501	3.1e-38	132.5	Ulp1 protease family, C-terminal catalytic domain
`XP_057774586.1`	Pfam	`PF02902`	Peptidase_C48	Domain	307	500	3.1e-38	132.5	Ulp1 protease family, C-terminal catalytic domain
`XP_057774587.1`	Pfam	`PF02902`	Peptidase_C48	Domain	306	499	3.1e-38	132.5	Ulp1 protease family, C-terminal catalytic domain
`XP_057774588.1`	Pfam	`PF02902`	Peptidase_C48	Domain	308	508	3.6e-40	138.8	Ulp1 protease family, C-terminal catalytic domain
`XP_057774589.1`	Pfam	`PF02902`	Peptidase_C48	Domain	307	507	3.6e-40	138.8	Ulp1 protease family, C-terminal catalytic domain
`XP_057774590.1`	Pfam	`PF02902`	Peptidase_C48	Domain	306	506	3.6e-40	138.8	Ulp1 protease family, C-terminal catalytic domain
`XP_057774591.1`	Pfam	`PF02902`	Peptidase_C48	Domain	305	505	3.5e-40	138.9	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057918608.1
ATATTAGTGTAAGCTGTTGTATAGTGTTTTGCGGGTTTGCCCCCGAGCCGAGAAGAAAGCCGCAATCATCATCACGGAAGAAAGGGGCAAAACTGCCGACTGCTCACTTTCTCTCACCGGCAACCCTACACACAGATGCATGGCAGAGGGAGGAGAGAGAAAGAGAAAAGGAGGTATAGAACTCGACTTCGACACGCTACTCGGCAGAGACGACGAGCCTCCCCCGGAGTTACTCATTCAGGATGCGCCCGCGCACGCCG...

XM_057918607.1
ATATTAGTGTAAGCTGTTGTATAGTGTTTTGCGGGTTTGCCCCCGAGCCGAGAAGAAAGCCGCAATCATCATCACGGAAGAAAGGGGCAAAACTGCCGACTGCTCACTTTCTCTCACCGGCAACCCTACACACAGATGCATGGCAGAGGGAGGAGAGAGAAAGAGAAAAGGAGGTATAGAACTCGACTTCGACACGCTACTCGGCAGAGACGACGAGCCTCCCCCGGAGTTACTCATTCAGGATGCGCCCGCGCACGCCG...

CDS

7 records

下载 CDS FASTA

LOC130993639
ATGGCAGAGGGAGGAGAGAGAAAGAGAAAAGGAGGTATAGAACTCGACTTCGACACGCTACTCGGCAGAGACGACGAGCCTCCCCCGGAGTTACTCATTCAGGATGCGCCCGCGCACGCCGAGGAGGTGGACCCGATGGCCGACATTCACCTCAGAAAGCTCTCCGACAAAGACCTCACCGAGAGGATTACTAGGGTCAGAAAGTTCAATGCGTCTAAATTGCCCGACGGCGGCGAGAAATTGAGAGCACTCAATAAGAA...

Protein

7 records

下载 Protein FASTA

XP_057774585.1
MAEGGERKRKGGIELDFDTLLGRDDEPPPELLIQDAPAHAEEVDPMADIHLRKLSDKDLTERITRVRKFNASKLPDGGEKLRALNKKLEAEVARRNLEKDKKVITLADDSTGNGAMDDLSHPQAPPSKPTSEFAFQFCSKLDKERTNRSFQEELSTLNQSDHKKIREHKPFLAQITQKHGLSSRQTPFKSPNHLSANIGNQQQTNGEKRGIKASNSTSNLSDKDVSGRSTKKESGAHSLHQHNTRRNNRRSFVLVDEDEE...

XP_057774586.1
MAEGGERKRKGGIELDFDTLLGRDDEPPPELLIQDAPAHAEEVDPMADIHLRKLSDKDLTERITRVRKFNASKLPDGGEKLRALNKKLEAEVARRNLEKDKKVITLADDSTGNGAMDDLSHPQAPPSKPTSEFAFQFCSKLDKERTNRSFQEELSTLNQSDHKKIREHKPFLAQITQKHGLSSRQTPFKSPNHLSANIGNQQQTNGEKRGIKASNSTSNLSDKDVSGRSTKKESGAHSLHQHNTRRNNRRSFVLVDEDEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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