Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002574`

染色体: Chr07 坐标: 24574402-24579646 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002574`
名称	SmilChr07G002574
描述	RNA-binding motif protein 25
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24574402 - 24579646 / `+`

ID 对照

NCBI Gene ID	`LOC130993643`
GeneID	`130993643`
locus_tag	`-`
NCBI Name	`LOC130993643`
原始查询	`SmilChr07G002574`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding motif protein 25
产物	RNA-binding motif protein 25
Arabidopsis	`AT1G60200` (AT1G60200) splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842315] identity=46.5; qcov=1.05; evalue=1.28e-164; confidence=high
Rice	`Os08g0416400` - identity=53.7; qcov=0.387; evalue=3.68e-96; confidence=low
GO	GO:0003723 (RNA binding); GO:0006397 (mRNA processing)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF01480 (PWI)
InterPro	-
eggNOG	-
NR	GeneID:130993643

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774598.1`
2	Nucleoplasm	核质	1.00000	`XP_057774600.1`
3	Nuclear speckle	核斑点	0.80000	`XP_057774600.1`
4	Chromatin	染色质	0.20000	`XP_057774600.1`
5	Chromosome	染色体	0.00000	`XP_057774598.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24574847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,B61
`Chr7:24574859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr7:24574872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:24575986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr7:24577379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:24577908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,C10,C39
`Chr7:24578062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr7:24578145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:24578818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,C46
`Chr7:24579462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774598.1

930 aa

465

930

RRM_1

PWI

PF00076 RRM_1 217-285 aa PF01480 PWI 853-916 aa

XP_057774599.1

928 aa

464

928

RRM_1

PWI

PF00076 RRM_1 217-285 aa PF01480 PWI 851-914 aa

XP_057774600.1

843 aa

422

843

RRM_1

PWI

PF00076 RRM_1 130-198 aa PF01480 PWI 766-829 aa

XP_057774601.1

826 aa

413

826

RRM_1

PWI

PF00076 RRM_1 113-181 aa PF01480 PWI 749-812 aa

XP_057774602.1

819 aa

410

819

RRM_1

PWI

PF00076 RRM_1 106-174 aa PF01480 PWI 742-805 aa

XP_057774603.1

819 aa

410

819

RRM_1

PWI

PF00076 RRM_1 106-174 aa PF01480 PWI 742-805 aa

XP_057774604.1

815 aa

408

815

RRM_1

PWI

PF00076 RRM_1 102-170 aa PF01480 PWI 738-801 aa

XP_057774605.1

813 aa

406

813

RRM_1

PWI

PF00076 RRM_1 102-170 aa PF01480 PWI 736-799 aa

XP_057774606.1

798 aa

399

798

RRM_1

PWI

PF00076 RRM_1 85-153 aa PF01480 PWI 721-784 aa

XP_057774607.1

781 aa

390

781

RRM_1

PWI

PF00076 RRM_1 68-136 aa PF01480 PWI 704-767 aa

XP_057774608.1

765 aa

382

765

RRM_1

PWI

PF00076 RRM_1 52-120 aa PF01480 PWI 688-751 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774598.1`	Pfam	`PF00076`	RRM_1	Domain	217	285	1.3e-10	41.7	RNA recognition motif
`XP_057774598.1`	Pfam	`PF01480`	PWI	Family	853	916	3.3e-13	50.5	PWI domain
`XP_057774599.1`	Pfam	`PF00076`	RRM_1	Domain	217	285	1.3e-10	41.7	RNA recognition motif
`XP_057774599.1`	Pfam	`PF01480`	PWI	Family	851	914	3.3e-13	50.5	PWI domain
`XP_057774600.1`	Pfam	`PF00076`	RRM_1	Domain	130	198	1e-10	42.0	RNA recognition motif
`XP_057774600.1`	Pfam	`PF01480`	PWI	Family	766	829	2.8e-13	50.7	PWI domain
`XP_057774601.1`	Pfam	`PF00076`	RRM_1	Domain	113	181	9.7e-11	42.1	RNA recognition motif
`XP_057774601.1`	Pfam	`PF01480`	PWI	Family	749	812	2.7e-13	50.8	PWI domain
`XP_057774602.1`	Pfam	`PF00076`	RRM_1	Domain	106	174	9.5e-11	42.1	RNA recognition motif
`XP_057774602.1`	Pfam	`PF01480`	PWI	Family	742	805	2.6e-13	50.8	PWI domain
`XP_057774603.1`	Pfam	`PF00076`	RRM_1	Domain	106	174	9.5e-11	42.1	RNA recognition motif
`XP_057774603.1`	Pfam	`PF01480`	PWI	Family	742	805	2.6e-13	50.8	PWI domain
`XP_057774604.1`	Pfam	`PF00076`	RRM_1	Domain	102	170	9.4e-11	42.1	RNA recognition motif
`XP_057774604.1`	Pfam	`PF01480`	PWI	Family	738	801	2.6e-13	50.8	PWI domain
`XP_057774605.1`	Pfam	`PF00076`	RRM_1	Domain	102	170	9.4e-11	42.2	RNA recognition motif
`XP_057774605.1`	Pfam	`PF01480`	PWI	Family	736	799	2.6e-13	50.8	PWI domain
`XP_057774606.1`	Pfam	`PF00076`	RRM_1	Domain	85	153	9e-11	42.2	RNA recognition motif
`XP_057774606.1`	Pfam	`PF01480`	PWI	Family	721	784	2.5e-13	50.8	PWI domain
`XP_057774607.1`	Pfam	`PF00076`	RRM_1	Domain	68	136	8.6e-11	42.3	RNA recognition motif
`XP_057774607.1`	Pfam	`PF01480`	PWI	Family	704	767	2.4e-13	50.9	PWI domain
`XP_057774608.1`	Pfam	`PF00076`	RRM_1	Domain	52	120	8.1e-11	42.3	RNA recognition motif
`XP_057774608.1`	Pfam	`PF01480`	PWI	Family	688	751	2.3e-13	51.0	PWI domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057918615.1
GGACCGCACACGTCAGCCATGAAACTCAATCTTTACCGCAGCACAAAACCCAAATTAGGGCTCAGAAATCTCAGTGGTCTGTGAAAACCCCCGGAACTGGAAAAACGACAACTTCATCATCATCTACCAATGGCGGATTCAACGCCAGCGCCGGAAACTACCGCCGCCCCCGCTGACCACAATCCCACCCTCGATCAACCCGAACCCGAATCTCGATCCGCCCAACCCGATCCATCTTCCACATCGCTTCCCCCGTTTCC...

XM_057918616.1
GGACCGCACACGTCAGCCATGAAACTCAATCTTTACCGCAGCACAAAACCCAAATTAGGGCTCAGAAATCTCAGTGGTCTGTGAAAACCCCCGGAACTGGAAAAACGACAACTTCATCATCATCTACCAATGGCGGATTCAACGCCAGCGCCGGAAACTACCGCCGCCCCCGCTGACCACAATCCCACCCTCGATCAACCCGAACCCGAATCTCGATCCGCCCAACCCGATCCATCTTCCACATCGCTTCCCCCGTTTCC...

CDS

11 records

下载 CDS FASTA

LOC130993643
ATGGCGGATTCAACGCCAGCGCCGGAAACTACCGCCGCCCCCGCTGACCACAATCCCACCCTCGATCAACCCGAACCCGAATCTCGATCCGCCCAACCCGATCCATCTTCCACATCGCTTCCCCCGTTTCCAAACCCTAACCCTAGCGGGCCTCCGCCTCCATCAGTTCTCGCTCCTCCTCCTCCTGCGATGCAACCCTCCTTCCGCCCTGCTGGGGCGCTGGTCCCCTTGCCTCCGGGAGCCGCTGCCCCGCAATTCTC...

Protein

11 records

下载 Protein FASTA

XP_057774598.1
MADSTPAPETTAAPADHNPTLDQPEPESRSAQPDPSSTSLPPFPNPNPSGPPPPSVLAPPPPAMQPSFRPAGALVPLPPGAAAPQFSHVSYQAPGVPPPGVVPAPAVGSGPVASVHPVMAPPYAMSGQPMRYRPPMPNGYPGIPQPLHQGAMPPGVPRYPSPYAPMLRPAFPPQPLVGVMPPLARPPVIGIRGPIVPPIVRPITPSVTSAEEPQTTVYVGKISSTVDNDYMLSLLQLCGPVKNWKRPQDPTGTLRGFGFC...

XP_057774599.1
MADSTPAPETTAAPADHNPTLDQPEPESRSAQPDPSSTSLPPFPNPNPSGPPPPSVLAPPPPAMQPSFRPAGALVPLPPGAAAPQFSHVSYQAPGVPPPGVVPAPAVGSGPVASVHPVMAPPYAMSGQPMRYRPPMPNGYPGIPQPLHQGAMPPGVPRYPSPYAPMLRPAFPPQPLVGVMPPLARPPVIGIRGPIVPPIVRPITPSVTSAEEPQTTVYVGKISSTVDNDYMLSLLQLCGPVKNWKRPQDPTGTLRGFGFC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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