当前解析结果
SmilChr07G002584| 统一新 Gene ID | SmilChr07G002584 |
|---|---|
| 名称 | SmilChr07G002584 |
| 描述 | superoxide dismutase [Fe] 3, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24717906 - 24720905 / - |
| NCBI Gene ID | LOC130993652 |
|---|---|
| GeneID | 130993652 |
| locus_tag | - |
| NCBI Name | LOC130993652 |
| 原始查询 | SmilChr07G002584 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | superoxide dismutase [Fe] 3, chloroplastic |
| 产物 | superoxide dismutase [Fe] 3%2C chloroplastic |
| Arabidopsis | AT5G23310 (FSD3)Fe superoxide dismutase 3 [Source:NCBI gene (formerly Entrezgene);Acc:832395] identity=77.1; qcov=0.801; evalue=1.59e-130; confidence=high |
| Rice | Os06g0143000 (SodB)- identity=64.6; qcov=0.871; evalue=1.54e-113; confidence=high |
| GO | GO:0004784 (superoxide dismutase activity); GO:0006801 (superoxide metabolic process); GO:0042644 (chloroplast nucleoid); GO:0046872 (metal ion binding) |
| KEGG | smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00081 (Sod_Fe_N); PF02777 (Sod_Fe_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993652 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774616.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057774616.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774616.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774616.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24718340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,D2 |
Chr7:24718344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B136,C79 |
Chr7:24719703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C61 |
Chr7:24719783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B136,C79 |
Chr7:24720413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr7:24720414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C61 |
Chr7:24720434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B104 |
Chr7:24720435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,B84 |
Chr7:24720583 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C63 |
Chr7:24720583 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C63 |
Chr7:24720597 |
AC |
A |
1bp_deletion | frameshift_variant | 94 | A14,A18,A22,A24,A3,A4,A7,B1,B100,B102,B104,B108,B11,B113,B117,B12,B120,B121,B123,B126,B127,B13,B132,B14,B140,B17,B19,B22,B24,B25,B26,B29,B36,B37,B38,B39,B40,B41,B48,B49,B53,B54,B55,B6,B60,B62,B64,B67,B68,B69,B70,B72,B74,B80,B81,B82,B85,B87,B88,B9,B91,B95,C1,C15,C21,C23,C28,C29,C3,C31,C38,C40,C41,C48,C5,C51,C52,C58,C60,C62,C63,C67,C69,C7,C70,C81,C83,C85,D3,D4,D5,D6,D8,D9 |
Chr7:24720600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774616.1PF00081
Sod_Fe_N 59-143 aa
PF02777
Sod_Fe_C 154-253 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774616.1 |
Pfam | PF00081 |
Sod_Fe_N | Domain | 59 | 143 | 1.9e-16 | 61.0 | Iron/manganese superoxide dismutases, alpha-hairpin domain |
XP_057774616.1 |
Pfam | PF02777 |
Sod_Fe_C | Domain | 154 | 253 | 1.1e-33 | 116.0 | Iron/manganese superoxide dismutases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。