Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002601`

染色体: Chr07 坐标: 25010972-25020524 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002601`
名称	SmilChr07G002601
描述	WAT1-related protein At3g28050-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	25010972 - 25020524 / `+`

ID 对照

NCBI Gene ID	`LOC130993670`
GeneID	`130993670`
locus_tag	`-`
NCBI Name	`LOC130993670`
原始查询	`SmilChr07G002601`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At3g28050-like
产物	WAT1-related protein At3g28050-like
Arabidopsis	`AT5G40210` (UMAMIT42) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:834019] identity=39.7; qcov=0.991; evalue=3.03e-67; confidence=medium
Rice	`Os08g0561500` (OsUMAMIT12) - identity=31.3; qcov=1.03; evalue=1.38e-50; confidence=low
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:130993670

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057774638.1`
2	Vacuole	液泡	0.40000	`XP_057774639.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057774643.1`
4	Nucleus	细胞核	0.00000	`XP_057774638.1`
5	Chromosome	染色体	0.00000	`XP_057774638.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:25011169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C1
`Chr7:25011202`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B19
`Chr7:25011202`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B19
`Chr7:25011205`	`AAT`	`A`	2bp_deletion	frameshift_variant	1	B19
`Chr7:25011205`	`AAT`	`A`	2bp_deletion	CDS_variant	1	B19
`Chr7:25011209`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B19
`Chr7:25011209`	`GC`	`G`	1bp_deletion	CDS_variant	1	B19
`Chr7:25011211`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	B19
`Chr7:25011211`	`ACC`	`A`	2bp_deletion	CDS_variant	1	B19
`Chr7:25011215`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B19
`Chr7:25011215`	`GC`	`G`	1bp_deletion	CDS_variant	1	B19
`Chr7:25011219`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774638.1

349 aa

174

349

EamA

PF00892 EamA 15-150 aa

XP_057774639.1

332 aa

166

332

EamA

PF00892 EamA 15-150 aa

XP_057774642.1

331 aa

166

331

EamA

PF00892 EamA 15-150 aa

XP_057774643.1

328 aa

164

328

EamA

PF00892 EamA 162-299 aa

XP_057774644.1

328 aa

164

328

EamA

PF00892 EamA 162-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774638.1`	Pfam	`PF00892`	EamA	Domain	15	150	2.9e-12	47.7	EamA-like transporter family
`XP_057774639.1`	Pfam	`PF00892`	EamA	Domain	15	150	8.8e-11	42.9	EamA-like transporter family
`XP_057774642.1`	Pfam	`PF00892`	EamA	Domain	15	150	1.3e-10	42.4	EamA-like transporter family
`XP_057774643.1`	Pfam	`PF00892`	EamA	Domain	162	299	2.3e-11	44.8	EamA-like transporter family
`XP_057774644.1`	Pfam	`PF00892`	EamA	Domain	162	299	2.3e-11	44.8	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057918655.1
ATATAGAACAAAGTCTTCCTTCCTCCAAATATTTGAATATTATAAAGTTGAGCCAACCACTACAGGCAAAAGCAAGTTCCATTACTCCAACTACTGAAGATCTTCTTAAAATTAATTCCAAAGCTTCATCAATGGCGACGACGTGGATTCGGAGGTCAACGCCTTATGCAGGGATGGTGTCGGCGGTTGTAGCTTTGGCCATAAACCAGATTACAAGCAAAATGGCCATGTCCAATGGCACCAGCTTCTACATTTTGTCC...

XM_057918656.1
AATATTATAAAGTTGAGCCAACCACTACAGGCAAAAGCAAGTTCCATTACTCCAACTACTGAAGATCTTCTTAAAATTAATTCCAAAGCTTCATCAATGGCGACGACGTGGATTCGGAGGTCAACGCCTTATGCAGGGATGGTGTCGGCGGTTGTAGCTTTGGCCATAAACCAGATTACAAGCAAAATGGCCATGTCCAATGGCACCAGCTTCTACATTTTGTCCGTTTATTCTAATGCTTTAGCTGCTCTCTTTCTTTT...

CDS

5 records

下载 CDS FASTA

LOC130993670
ATGGCGACGACGTGGATTCGGAGGTCAACGCCTTATGCAGGGATGGTGTCGGCGGTTGTAGCTTTGGCCATAAACCAGATTACAAGCAAAATGGCCATGTCCAATGGCACCAGCTTCTACATTTTGTCCGTTTATTCTAATGCTTTAGCTGCTCTCTTTCTTTTCCCTACTGCCTATCTCTTCCACCGCTCAAAGCGCCCCCCTTTATCGTTCTCGGTGCTCTGGAGGATTTTCTTCCTTGCTTCTTTTGGATGTTTCTC...

Protein

5 records

下载 Protein FASTA

XP_057774638.1
MATTWIRRSTPYAGMVSAVVALAINQITSKMAMSNGTSFYILSVYSNALAALFLFPTAYLFHRSKRPPLSFSVLWRIFFLASFGCFSDMACYAGVDYSSPTLSTAMLNLVPAFAYILAVIFRLEEVDFRRLSTIAKSLGTIVSISGAFVVTFYNGPAILNKPLTPGSLTQLYSSSTQNWVLGGFLLASAALAVASWCILQAFILKMYQAEMIVVAFYCLFVTIQSSVVTLIAERDATIWRIDTKIGLIAILYSAIINIAC...

XP_057774639.1
MATTWIRRSTPYAGMVSAVVALAINQITSKMAMSNGTSFYILSVYSNALAALFLFPTAYLFHRSKRPPLSFSVLWRIFFLASFGCFSDMACYAGVDYSSPTLSTAMLNLVPAFAYILAVIFRLEEVDFRRLSTIAKSLGTIVSISGAFVVTFYNGPAILNKPLTPGSLTQLYSSSTQNWVLGGFLLASAALAVASWCILQAFILKMYQAEMIVVAFYCLFVTIQSSVVTLIAERDATIWRIDTKIGLIAILYSAIINIAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器