当前解析结果
SmilChr07G002622| 统一新 Gene ID | SmilChr07G002622 |
|---|---|
| 名称 | SmilChr07G002622 |
| 描述 | UDP-glycosyltransferase 74B1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25282843 - 25285559 / - |
| NCBI Gene ID | LOC130993683 |
|---|---|
| GeneID | 130993683 |
| locus_tag | - |
| NCBI Name | LOC130993683 |
| 原始查询 | SmilChr07G002622 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 74B1-like |
| 产物 | UDP-glycosyltransferase 74B1-like |
| Arabidopsis | AT1G24100 (UGT74B1)UDP-glucosyl transferase 74B1 [Source:NCBI gene (formerly Entrezgene);Acc:839022] identity=50.2; qcov=0.98; evalue=6.86e-158; confidence=high |
| Rice | Os09g0518200 (OsSGT)- identity=49.7; qcov=0.991; evalue=7.73e-150; confidence=high |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00966 (Glucosinolate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993683 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057774670.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057774670.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774670.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774670.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774670.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25283145 |
CT |
C |
1bp_deletion | frameshift_variant | 29 | A18,A24,B103,B11,B113,B129,B140,B17,B24,B32,B36,B42,B43,B6,B67,B72,B79,B89,B95,C17,C30,C35,C40,C43,C50,C53,C67,C70,C81 |
Chr7:25283146 |
T |
TC |
1bp_insertion | frameshift_variant | 28 | A18,A24,B103,B11,B113,B129,B140,B17,B24,B32,B42,B43,B6,B67,B72,B79,B89,B95,C17,C30,C35,C40,C43,C50,C53,C67,C70,C81 |
Chr7:25283283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:25283379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B88,C32,C68 |
Chr7:25283484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:25283712 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B108 |
Chr7:25283712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:25284973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,D11 |
Chr7:25285041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A8,B3,B88 |
Chr7:25285090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr7:25285145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr7:25285151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774670.1PF00201
UDPGT 213-416 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774670.1 |
Pfam | PF00201 |
UDPGT | Family | 213 | 416 | 2.4e-28 | 100.0 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。