当前解析结果
SmilChr07G002632| 统一新 Gene ID | SmilChr07G002632 |
|---|---|
| 名称 | SmilChr07G002632 |
| 描述 | uncharacterized SmilChr07G002632 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25388722 - 25394581 / - |
| NCBI Gene ID | LOC130994010 |
|---|---|
| GeneID | 130994010 |
| locus_tag | - |
| NCBI Name | LOC130994010 |
| 原始查询 | SmilChr07G002632 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=29.6; qcov=0.301; evalue=1.22e-37; confidence=low |
| Rice | Os06g0484800- identity=27.2; qcov=0.462; evalue=4.33e-63; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775029.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775029.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057775029.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775029.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775029.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25388826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:25388865 |
G |
A |
EMS_canonical_SNV | stop_gained | 162 | A1,A10,A13,A14,A15,A18,A19,A2,A24,A25,A4,A5,A7,A9,B1,B100,B105,B106,B108,B109,B110,B114,B117,B118,B119,B12,B120,B122,B123,B126,B130,B131,B132,B138,B139,B14,B140,B18,B22,B23,B26,B27,B28,B3,B34,B36,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B55,B56,B57,B58,B59,B6,B61,B62,B63,B64,B65,B66,B7,B70,B71,B72,B73,B74,B76,B78,B8,B81,B82,B83,B84,B85,B86,B87,B89,B9,B91,B93,B94,B95,B96,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C27,C29,C3,C31,C34,C35,C37,C38,C40,C47,C49,C5,C50,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C72,C75,C76,C78,C79,C80,C82,C83,C84,C86,C87,C9,D11,D2,D6,D7,D9 |
Chr7:25388894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr7:25390183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,C69,D8 |
Chr7:25390205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,B62 |
Chr7:25390206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B61,B73,C12,C28,C29 |
Chr7:25390214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:25390222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D8 |
Chr7:25390235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:25390282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B71,B80,C15,C53 |
Chr7:25390285 |
CA |
C |
1bp_deletion | frameshift_variant | 22 | A14,A19,A6,B103,B124,B18,B25,B29,B42,B5,B51,B59,B60,B65,B83,B97,C14,C24,C27,C36,C46,C53 |
Chr7:25390386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775029.1PF00078
RVT_1 482-601 aa
PF13966
zf-RVT 857-936 aa
PF13456
RVT_3 1064-1183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775029.1 |
Pfam | PF00078 |
RVT_1 | Domain | 482 | 601 | 9e-14 | 52.5 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775029.1 |
Pfam | PF13966 |
zf-RVT | Domain | 857 | 936 | 1.6e-15 | 58.2 | zinc-binding in reverse transcriptase |
XP_057775029.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1064 | 1183 | 2.4e-12 | 47.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。