当前解析结果
SmilChr07G002641| 统一新 Gene ID | SmilChr07G002641 |
|---|---|
| 名称 | SmilChr07G002641 |
| 描述 | non-functional NADPH-dependent codeinone reductase 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25565811 - 25567329 / + |
| NCBI Gene ID | LOC130993706 |
|---|---|
| GeneID | 130993706 |
| locus_tag | - |
| NCBI Name | LOC130993706 |
| 原始查询 | SmilChr07G002641 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | non-functional NADPH-dependent codeinone reductase 2-like |
| 产物 | non-functional NADPH-dependent codeinone reductase 2-like |
| Arabidopsis | AT1G59960 (AT1G59960)NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842290] identity=52.5; qcov=0.763; evalue=3.31e-74; confidence=high |
| Rice | Os04g0447700- identity=53.3; qcov=0.752; evalue=2.49e-73; confidence=high |
| GO | GO:0004032 (aldose reductase (NADPH) activity); GO:0005829 (cytosol) |
| KEGG | smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00248 (Aldo_ket_red) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993706 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774713.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057774713.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057774713.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774714.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774714.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25566119 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C72 |
Chr7:25566119 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C72 |
Chr7:25566199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,B8,C8 |
Chr7:25566491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:25566494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B48,B84,C24,C50 |
Chr7:25566497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B26,D11,D8 |
Chr7:25566603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774713.1PF00248
Aldo_ket_red 21-293 aa
XP_057774714.1PF00248
Aldo_ket_red 21-189 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774713.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 21 | 293 | 2e-57 | 195.3 | Aldo/keto reductase family |
XP_057774714.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 21 | 189 | 9.8e-39 | 133.9 | Aldo/keto reductase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。