Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002652`

染色体: Chr07 坐标: 25688921-25692881 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002652`
名称	SmilChr07G002652
描述	protein WVD2-like 7
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	25688921 - 25692881 / `-`

ID 对照

NCBI Gene ID	`LOC130993717`
GeneID	`130993717`
locus_tag	`-`
NCBI Name	`LOC130993717`
原始查询	`SmilChr07G002652`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein WVD2-like 7
产物	protein WVD2-like 7
Arabidopsis	`AT1G24160` (AT1G24160) triadin [Source:NCBI gene (formerly Entrezgene);Acc:839029] identity=33.68; qcov=0.935; evalue=2.45e-51; confidence=low
Rice	`Os01g0885300` - identity=54.55; qcov=0.122; evalue=4.82e-15; confidence=weak
GO	-
KEGG	-
Pfam	PF06886 (TPX2)
InterPro	-
eggNOG	-
NR	GeneID:130993717

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057774726.1`
2	Cytosol	细胞质基质	0.40000	`XP_057774726.1`
3	Nucleus	细胞核	0.20000	`XP_057774735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:25689405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B99,D10
`Chr7:25689413`	`GC`	`G`	1bp_deletion	frameshift_variant	3	A21,B101,B81
`Chr7:25689413`	`GC`	`G`	1bp_deletion	CDS_variant	3	A21,B101,B81
`Chr7:25689446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C42,C70
`Chr7:25689500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:25690794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:25690818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:25690927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A18,B112,B12,B55
`Chr7:25691032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B132,B26,D11,D8
`Chr7:25691075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B99,D10
`Chr7:25691189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B56,B96
`Chr7:25691405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B101,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774732.1

504 aa

252

504

TPX2

PF06886 TPX2 454-498 aa

XP_057774733.1

504 aa

252

504

TPX2

PF06886 TPX2 454-498 aa

XP_057774734.1

504 aa

252

504

TPX2

PF06886 TPX2 454-498 aa

XP_057774735.1

487 aa

244

487

TPX2

PF06886 TPX2 437-481 aa

XP_057774736.1

487 aa

244

487

TPX2

PF06886 TPX2 437-481 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774732.1`	Pfam	`PF06886`	TPX2	Domain	454	498	1.1e-05	26.0	Targeting protein for Xklp2 (TPX2) domain
`XP_057774733.1`	Pfam	`PF06886`	TPX2	Domain	454	498	1.1e-05	26.0	Targeting protein for Xklp2 (TPX2) domain
`XP_057774734.1`	Pfam	`PF06886`	TPX2	Domain	454	498	1.1e-05	26.0	Targeting protein for Xklp2 (TPX2) domain
`XP_057774735.1`	Pfam	`PF06886`	TPX2	Domain	437	481	1e-05	26.1	Targeting protein for Xklp2 (TPX2) domain
`XP_057774736.1`	Pfam	`PF06886`	TPX2	Domain	437	481	1e-05	26.1	Targeting protein for Xklp2 (TPX2) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057918752.1
GACTACCAATTGAATCTGGTTGGATTCCAAAGGTTCACACGTGCCGTACCTTCTCCTCCATTACTGAAAAGATCTCGCACGTGCCAGCCCCATCTCTTGCATTTCTTGTCTGACTGTTACTGCACTTCACTCTTTTCTCTGGTGGGCCTGCGGAAACCATCTCTATCTACCCACCACCATCATCATTATCTTCAATTTGACTCTCTTCCAAGTCTTTCTTTACACAAATCTTTAGATGGATGATTCTGCGAAATCTGGTG...

XM_057918747.1
GACTACCAATTGAATCTGGTTGGATTCCAAAGGTTCACACGTGCCGTACCTTCTCCTCCATTACTGAAAAGATCTCGCACGTGCCAGCCCCATCTCTTGCATTTCTTGTCTGACTGTTACTGCACTTCACTCTTTTCTCTGGTGGGCCTGCGGAAACCATCTCTATCTACCCACCACCATCATCATTATCTTCAATTTGACTCTCTTCCAAGTCTTTCTTTACACAAATCTTTAGATGGATGATTCTGCGAAATCTGGTG...

CDS

11 records

下载 CDS FASTA

lcl|NC_080393.1_cds_XP_057774732.1_37925
ATGATTGTTGCTGTAGATAGACAGAGACCATGTTTTTCTTGTTCTTGCTTGATGGATGATTCTGCGAAATCTGGTGCTAGATTAGAAGTTTCGGTTTCATTTGGTAGGTTTGAGAATGATGCACTCTCGTGGGAGAAATGGTCTTCTTTCTCCCCCAACAAGTATTTGGAGGAAGTTGGGAGCTTATCAACACCGGGATCCGTGGCCCAGAAAAAGGCGTATTTCGAAGCTCACTACAAGAAGATTGCAGCTAGAAAAGC...

lcl|NC_080393.1_cds_XP_057774733.1_37926
ATGATTGTTGCTGTAGATAGACAGAGACCATGTTTTTCTTGTTCTTGCTTGATGGATGATTCTGCGAAATCTGGTGCTAGATTAGAAGTTTCGGTTTCATTTGGTAGGTTTGAGAATGATGCACTCTCGTGGGAGAAATGGTCTTCTTTCTCCCCCAACAAGTATTTGGAGGAAGTTGGGAGCTTATCAACACCGGGATCCGTGGCCCAGAAAAAGGCGTATTTCGAAGCTCACTACAAGAAGATTGCAGCTAGAAAAGC...

Protein

11 records

下载 Protein FASTA

XP_057774726.1
MIVAVDRQRPCFSCSCLMDDSAKSGARLEVSVSFGRFENDALSWEKWSSFSPNKYLEEVGSLSTPGSVAQKKAYFEAHYKKIAARKAEEMEQDSSISPIIPSPSKEDHSANSSENGAEFDLFSDERLVEEVGVEACATALTNVVIADEEKDDSARSSKEDEEGSCMNGVVASEEETGASVESGSSVVQEPKDEANAGVDNTQVNVSKDALLVVKDSQLILERPRGSKNVLKQSSVVKKENSKLNTRNVAQKVPPMNKEKN...

XP_057774727.1
MIVAVDRQRPCFSCSCLMDDSAKSGARLEVSVSFGRFENDALSWEKWSSFSPNKYLEEVGSLSTPGSVAQKKAYFEAHYKKIAARKAEEMEQDSSISPIIPSPSKEDHSANSSENGAEFDLFSDERLVEEVGVEACATALTNVVIADEEKDDSARSSKEDEEGSCMNGVVASEEETGASVESGSSVVQEPKDEANAGVDNTQVNVSKDALLVVKDSQLILERPRGSKNVLKQSSVVKKENSKLNTRNVAQKVPPMNKEKN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器