当前解析结果
SmilChr07G002657| 统一新 Gene ID | SmilChr07G002657 |
|---|---|
| 名称 | SmilChr07G002657 |
| 描述 | DExH-box ATP-dependent RNA helicase DExH15 chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25755404 - 25763687 / + |
| NCBI Gene ID | LOC130993723 |
|---|---|
| GeneID | 130993723 |
| locus_tag | - |
| NCBI Name | LOC130993723 |
| 原始查询 | SmilChr07G002657 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DExH-box ATP-dependent RNA helicase DExH15 chloroplastic |
| 产物 | DExH-box ATP-dependent RNA helicase DExH15 chloroplastic |
| Arabidopsis | AT1G70070 (EMB25)DEAD/DEAH box helicase [Source:NCBI gene (formerly Entrezgene);Acc:843343] identity=71.2; qcov=0.901; evalue=0; confidence=high |
| Rice | Os02g0739000- identity=69.9; qcov=0.898; evalue=0; confidence=high |
| GO | GO:0003676 (nucleic acid binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0055087 (Ski complex); GO:0070478 (nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF08148 (DSHCT); PF22527 (DEXQc_Suv3); PF25446 (SH3_ISE2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993723 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774741.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057774741.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774741.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774741.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774741.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25755895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B119,B122,B81,C27 |
Chr7:25755900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B112,B12,B55 |
Chr7:25755960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B17,C30,C70 |
Chr7:25759211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,C32,C68 |
Chr7:25759554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B112,B12,B55 |
Chr7:25759841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C8 |
Chr7:25760223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B36,C18,C77 |
Chr7:25760475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:25760499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C33,C46,C6 |
Chr7:25762642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B17,C30,C47,C70 |
Chr7:25762744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B119,B122,B81,C27 |
Chr7:25763198 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B15,B57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774741.1PF04851
ResIII 169-321 aa
PF00270
DEAD 169-325 aa
PF22527
DEXQc_Suv3 187-319 aa
PF00271
Helicase_C 513-575 aa
PF25446
SH3_ISE2 732-912 aa
PF08148
DSHCT 1002-1151 aa
XP_057774743.1PF04851
ResIII 169-321 aa
PF00270
DEAD 169-325 aa
PF22527
DEXQc_Suv3 187-319 aa
PF00271
Helicase_C 513-575 aa
PF25446
SH3_ISE2 732-912 aa
PF08148
DSHCT 1002-1165 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774741.1 |
Pfam | PF04851 |
ResIII | Family | 169 | 321 | 2.7e-11 | 44.4 | Type III restriction enzyme, res subunit |
XP_057774741.1 |
Pfam | PF00270 |
DEAD | Domain | 169 | 325 | 5.6e-30 | 105.0 | DEAD/DEAH box helicase |
XP_057774741.1 |
Pfam | PF22527 |
DEXQc_Suv3 | Domain | 187 | 319 | 5.1e-10 | 39.8 | DEXQ-box helicase domain of Suv3 |
XP_057774741.1 |
Pfam | PF00271 |
Helicase_C | Domain | 513 | 575 | 1.9e-05 | 25.6 | Helicase conserved C-terminal domain |
XP_057774741.1 |
Pfam | PF25446 |
SH3_ISE2 | Domain | 732 | 912 | 5.4e-89 | 297.3 | ISE2, SH3 domain |
XP_057774741.1 |
Pfam | PF08148 |
DSHCT | Domain | 1002 | 1151 | 2.4e-29 | 103.1 | DSHCT (NUC185) domain |
XP_057774743.1 |
Pfam | PF04851 |
ResIII | Family | 169 | 321 | 2.6e-11 | 44.4 | Type III restriction enzyme, res subunit |
XP_057774743.1 |
Pfam | PF00270 |
DEAD | Domain | 169 | 325 | 5.5e-30 | 105.0 | DEAD/DEAH box helicase |
XP_057774743.1 |
Pfam | PF22527 |
DEXQc_Suv3 | Domain | 187 | 319 | 4.9e-10 | 39.9 | DEXQ-box helicase domain of Suv3 |
XP_057774743.1 |
Pfam | PF00271 |
Helicase_C | Domain | 513 | 575 | 1.9e-05 | 25.6 | Helicase conserved C-terminal domain |
XP_057774743.1 |
Pfam | PF25446 |
SH3_ISE2 | Domain | 732 | 912 | 5.3e-89 | 297.4 | ISE2, SH3 domain |
XP_057774743.1 |
Pfam | PF08148 |
DSHCT | Domain | 1002 | 1165 | 9.2e-34 | 117.4 | DSHCT (NUC185) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。